Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00079 ATGATGAAGAAAAAGTGTAGTTCAGGTCGCCAAAGGATTCCAATTGAGAAAATACCTAAAAAGAGTCACTTGCAGGTGACCTTTTCGAAGCGTCGTTCGGGACTCTTCAAAAAAGCTAGTGAGCTTTGCACACTTTGTGGAGTGGAAGTTGCCATCATTGTTTTCTCTCCTGCTGATAAGGCCTTTTCATTTGGACACCCAGAAGTTGAATCTGTGATTGATTCTTACCTAACTCCAAATTCATCACTGGAGAGTAATCTTGGTAATGGTCACCAACTTGTTGAGGCTCATCGTGGTGCTAATATTCGTAATCTTAACATGCAACTTACTCAGATTGTTAATGAGCTAGAGATGGAGAAAAGGCAAGGAGAAGAGCTTGATCGAATGTGGAAAACTAGACTGAGACAATTCTGGTGGGAGATCCCAGTTAATGAACTTGGATTGCAAGAGTTGCAACATTTAGTGTTTTCATTGGAGGAACTAAAGAACAGTGTTGCAAAATATGCTACTCAGCTAATGTTGATGGATCAAACAACTCTTGCTCCACCGATTACTGGGCCCAGGCCCAGTGAATTTGGGCCTTATGATGTCTTCGATAACAAACATGCCGAGATTTACCCTAATAATCCCAATCTGAATTTTCCATGTTGA 651 0.4101 MMKKKCSSGRQRIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEVAIIVFSPADKAFSFGHPEVESVIDSYLTPNSSLESNLGNGHQLVEAHRGANIRNLNMQLTQIVNELEMEKRQGEELDRMWKTRLRQFWWEIPVNELGLQELQHLVFSLEELKNSVAKYATQLMLMDQTTLAPPITGPRPSEFGPYDVFDNKHAEIYPNNPNLNFPC* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00079 216 SUPERFAMILY SRF-like 9 78 IPR036879 GO:0003677|GO:0046983
Phac2g00079 216 Gene3D - 89 179 - -
Phac2g00079 216 PANTHER MADS BOX PROTEIN 10 166 - -
Phac2g00079 216 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Phac2g00079 216 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Phac2g00079 216 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Phac2g00079 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Phac2g00079 216 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Phac2g00079 216 Coils Coil 102 126 - -
Phac2g00079 216 CDD MADS_MEF2_like 9 85 IPR033896 GO:0000977|GO:0045944
Phac2g00079 216 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Phac2g00079 216 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Phac2g00079 216 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00079 Phac-Chr2 395534 396220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g00079 7 199 Type I MADS-box Gene Family AT2G24840 46.341 1.06e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac2g00079 SRF-TF 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00079 - - gmx:100793705 248.825