Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00046 ATGGAGCCTGTTGAGGAGATCTCCCAAGAATGGATGAGTTGTCATAGTGAAGTGTACACAGAGGATGAAGCTGAGTTCATGAACCAGTTCTTCTATGAACGTTTCAACATGGAAACAGAAGCTCCAAATGCAAATTCTATCTTCTTTATACAAGGGAGTAGGCCTTGTGCTCATAGTACCAATCATATCTTTCCCACAACAAATGCTTCCAACAATTTGGGCCACGTGTTTTCCTTACAAGGGAATGACGCCAAATTGATGAATGAAAATACTGACCAAGAGTTGGGTCTTGGGAGAGAGAATCTTGCTGATATGGATTTGCAGGCTCACAAGGCACGCCAAGTATTAGTTTCTGAACCTGAAAAGGATAATACCAGAAGCATGGAGAAATCAGAAAAAAGGTTTAGGAGCTCATTTGAGGGCCCAGAGAACAAGAGGAATGTGAAATCTAAGAAGAATCCAAAACCAGCTTCTTTGAGGAACACTGAAGAGGAAGCAACTCAGACCTTAAGCAGTTGCTTTTCAGATGATGAATCCAAAGATTCTAGAGCAATGAAGTTAAGTGGAAAATCAAGATCTAATAGAGACCCTGCACTTGATCCACAGAGCTTGTATGCAAGAAAGAGAAGAGAGAGAATAAATGAAAGGTTGAGAATTCTACAAACACTGGTCCCGAATGGAACTAAGGTGGATATTAGCACAATGCTTGAGGAAGCTGTGCAACATGTGAAGTTTTTACAGCTTCAAATTAAGCTTCTGAGCTCTGATGATCTGTGGATGTACGCTCCCATTGCTTACAATGGAATGAGCATTGGCCCGGAACTTTTAACATCAACATCACCAAGCAACCAAAGAAATGCATAG 864 0.4109 MEPVEEISQEWMSCHSEVYTEDEAEFMNQFFYERFNMETEAPNANSIFFIQGSRPCAHSTNHIFPTTNASNNLGHVFSLQGNDAKLMNENTDQELGLGRENLADMDLQAHKARQVLVSEPEKDNTRSMEKSEKRFRSSFEGPENKRNVKSKKNPKPASLRNTEEEATQTLSSCFSDDESKDSRAMKLSGKSRSNRDPALDPQSLYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVQHVKFLQLQIKLLSSDDLWMYAPIAYNGMSIGPELLTSTSPSNQRNA* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00046 287 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 71 270 - -
Phac2g00046 287 MobiDBLite consensus disorder prediction 176 190 - -
Phac2g00046 287 FunFam Basic helix-loop-helix transcription factor 198 255 - -
Phac2g00046 287 Gene3D - 201 255 IPR036638 GO:0046983
Phac2g00046 287 SMART finulus 203 252 IPR011598 GO:0046983
Phac2g00046 287 Pfam Helix-loop-helix DNA-binding domain 207 247 IPR011598 GO:0046983
Phac2g00046 287 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 263 IPR036638 GO:0046983
Phac2g00046 287 MobiDBLite consensus disorder prediction 160 175 - -
Phac2g00046 287 CDD bHLH_AtIND_like 200 260 - -
Phac2g00046 287 MobiDBLite consensus disorder prediction 115 150 - -
Phac2g00046 287 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 246 IPR011598 GO:0046983
Phac2g00046 287 MobiDBLite consensus disorder prediction 113 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00046 Phac-Chr2 254526 256462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g00046 6 275 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 40.294 1.60e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac2g00046 HLH 2.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00046 - - var:108319891 414.846