Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00016 ATGGAGGAAGAGGAAGATGAAATGATGTGGTGTTCGTCTGATTCTTCTTCTTCTGATTCGGACGACGACAATATCGAAGAACGGAAATCGCAGAACGTGGATGCGCTTGTGAGGGGCAACCTCGTCGTGAAGAGACAATCGCTGCTACCGCGGCTACTGTCAGTATCGCAAGGGGCGGCTGTTTGTAGAAAACCCTTTAAACCTCCATCCTCCAAATCTCATGCTTCCACTTACAATCAAGACCTCACTCGTAGGCTTTCCGCTCGCAAAAGGTTTGTTCCATGGGGTTCTTCCTCTCCTATTCCTAGACCTGCGTTCCCCGACTTCCAGCTCAATTCACCACTAACTGAATCCCATGTTGATGTTCCTGTTTCTGAGGAGCTCAAACCATCTTTGCCCCCGGGGATCGACCCTTTAGTACTCTGGCACCCTCAAGACTCCCAGCATGACCCTTCTAATACTGATTTTACCACCATTACAGTTGACCCTTTGCTTGTTCGTTACCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTCATGTTTGACTGTGTCTCGGGGCTGTGTACCACGCCAAATATACATGGATGCATTTTGGCAGATGATATGGGTCTGGGGAAGACATTGCAGTCCATCACATTACTATATACTCTACTCTGTCAAGGGTTTGATGGCAAGCCGTTGGTTCGAAAATCCATCATAGTGACTCCTACCAGCCTTGTCAGTAATTGGGAAGCTGAAATAAAAAAGTGGGTTGGTGAAAGAGTTCGTCTTGTTGCTTTATGTGAAAGTACAAGAGAGGATGTTGTCTCTGCGATCGACAGTTTTACAAGTCCCGAAAGAAATTTACAGGTTCTGATTGTTTCATATGAGACATTCCGAATGCATTCTTCAAAGTTTAGCTCTAGTGACTCGTGTGACCTTCTCATATGTGACGAGGCTCACAGATTGAAAAATGATCAAACAATAACAAACCGGGCATTGGCAGCCCTCCCGTGCAAACGTAGAATTTTATTGTCAGGAACTCCCTTACAAAATGATTTAGAAGAATTCTTTGCAATGGTTAACTTTACCAATCCTGGAATATTGGGCAGTATTGCACATTTTCGACGTTACTATGAGGCACCGATTATTTGTGGAAGAGAACCTGCTGCCACTGCTGAAGAGAAGAAGATAGGTGCTGAACGGTCTGCTGAATTAAGTGTCAATGTTAATCGGTTCATATTAAGAAGGACTAATGCATTGTTATCAAATCATTTGCCACCTAAGATAGTTGAGGTTGTTTGCTGCAAGTTGACTCCACTACAGTCAGACCTATATAAACATTTTATACAATCCAAAAATGTTAAGAGGGCAATTACTGAAGAACTGAAGCAATCAAAGATTTTGACCTACATAACAGCTCTCAAAAAATTGTGCAATCATCCAAAGCTTATATATGATACTATACGAAGTGGGAGCCCAGGAATTTCAGGTTTTGAGGACTGTATCCGGTTCTTCCCGCCTGAAATGTTATCTGGAAGATCTGGCTCGTGGACGGGAGGGCATGGAGCATGGGTTGAACTATCTGGGAAAATGCATGTCTTGGCAAGATTACTTGCTCATTTACGTCAGAGAACAAATGACCGCATTGTTCTTGTCTCAAACTACACTCAGGACGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGTGGAAATCGACTTGTCTTGTTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGTAGTACCCTTGGCTGCAGCAAGAGTATGGAGGGATGGACAGAAGAACAGAGTTTTTATTTATAGATTTTTGAGTGCTGGAACAATAGAAGAAAAGGTTTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGCAGGAGCAAACTGATAGACTTGAGTCACAGGGTAACTTGCTTTCAACAGAGGATCTTCGTGATTTGTTTACTTTTCATGACAACATCAAGTCTGAGATTCATGAAAAGATGCAATGCAGTCGGTGTCAAATACATGATGGTCCTCGAAGCACTGATGCCCAATCAACAGAAGATAATGAATCTGGCGAAGAAACATCTGATATAGGTGGATTTGCAGAAATTGCTGGCTGCTTACAGAATTTAAAAAGATCAGAAAAGCAGGTTGCTTTGTGTATTTTTGGATATAAAGTTTACATACTCTATAGTTTAAAATGTTGCGTGCTTTTCTTTTGGGTAGGATGGGCACGTATTTTTTAA 2268 0.4237 MEEEEDEMMWCSSDSSSSDSDDDNIEERKSQNVDALVRGNLVVKRQSLLPRLLSVSQGAAVCRKPFKPPSSKSHASTYNQDLTRRLSARKRFVPWGSSSPIPRPAFPDFQLNSPLTESHVDVPVSEELKPSLPPGIDPLVLWHPQDSQHDPSNTDFTTITVDPLLVRYLRPHQREGVQFMFDCVSGLCTTPNIHGCILADDMGLGKTLQSITLLYTLLCQGFDGKPLVRKSIIVTPTSLVSNWEAEIKKWVGERVRLVALCESTREDVVSAIDSFTSPERNLQVLIVSYETFRMHSSKFSSSDSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGSIAHFRRYYEAPIICGREPAATAEEKKIGAERSAELSVNVNRFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVKRAITEELKQSKILTYITALKKLCNHPKLIYDTIRSGSPGISGFEDCIRFFPPEMLSGRSGSWTGGHGAWVELSGKMHVLARLLAHLRQRTNDRIVLVSNYTQDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQVVPLAAARVWRDGQKNRVFIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDRLESQGNLLSTEDLRDLFTFHDNIKSEIHEKMQCSRCQIHDGPRSTDAQSTEDNESGEETSDIGGFAEIAGCLQNLKRSEKQVALCIFGYKVYILYSLKCCVLFFWVGWARIF* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00016 755 CDD SF2_C_SNF 521 613 - -
Phac2g00016 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 410 IPR027417 -
Phac2g00016 755 MobiDBLite consensus disorder prediction 682 704 - -
Phac2g00016 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 678 IPR027417 -
Phac2g00016 755 SMART helicmild6 526 602 IPR001650 -
Phac2g00016 755 FunFam DNA repair and recombination protein RAD54 138 409 - -
Phac2g00016 755 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 447 648 IPR001650 -
Phac2g00016 755 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 360 IPR014001 -
Phac2g00016 755 MobiDBLite consensus disorder prediction 1 31 - -
Phac2g00016 755 FunFam Predicted protein 432 506 - -
Phac2g00016 755 SMART ultradead3 165 368 IPR014001 -
Phac2g00016 755 Gene3D - 141 409 IPR038718 -
Phac2g00016 755 PANTHER SNF2/RAD54 FAMILY MEMBER 43 551 - -
Phac2g00016 755 CDD DEXHc_RAD54 169 410 - -
Phac2g00016 755 Gene3D - 549 703 IPR027417 -
Phac2g00016 755 Gene3D - 432 511 - -
Phac2g00016 755 Pfam SNF2-related domain 172 478 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00016 Phac-Chr2 108708 116456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g00016 519 661 RAD5 or RAD16-like Gene Family AT5G22750 32.867 4.00e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac2g00016 SNF2_N 1.1e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00016 K10875 - gmx:100781631 1233.39