Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g04001 ATGCGAACTTCGTGGGCTGATTTGGCTACGAATTCCGTGCCGGAAAATGCCGGAGCATCCAACACCACAGCTCCGTCGCGGCCCGTTTATGTGCCTCCTCATCTGAGGAACCGTGGAGCATCAGCATCAGCTTCAGCATCAACGGAATCCTCCTCTGCTCCTCCACCACCCAATGTGAGCACTGATAACAATGCCGGATCACGGTGGGGTGCGCCCAGAAACGGGTGGGGGAACAGAAGCGGTGGCTGGGATCGGCGGGAAGTGAACCCCTTCGAAGATCAGGAGAATGCAGCTGAAGAGGGAGGAGCAGCTTTTGGCGAGGAGCAGGGAAACACGGGAATTAATTTTGATGCTTACGAGGACATTCCCGTTGAGACGAGCGGTGAAAACGTGCCCCCACCTGTGAATACTTTTGCGGAGATTGACTTGGGCGAGGCTCTTAATCAGAACATTAGACGCTGCAAATATGTTAAGCCAACGCCGGTCCAGCGGCATGGCATACCCATATCCCTTGGCGGACGGGATTTGATGGCTTGTGCGCAGACTGGTTCCGGAAAGACTGCGGCATTCTGTTTCCCTATTATCAGTGGCATTATGAGAGGTCAAGGGCAGCCCCTCCAGAGGCCCCCTCGCGGTGTCCGTACAGTCTATCCACTTGCCCTTGTTCTCTCGCCGACTAGGGAGTTATCCATGCAAATACATGAAGAGGCTAGGAAGTTTTCATACCAGACAGGGGTCAGGGTCGTTGTTGCCTATGGTGGAGCTCCTATAAACCAGCAGCTACGGGAACTTGAGAGAGGGGTGGATATTCTTGTTGCAACTCCAGGAAGATTGGTAGATTTGTTGGAGAGAGCTAGAGTTTCATTGCAGATGATCAAATATTTGGCCTTAGACGAGGCAGATAGAATGCTGGACATGGGTTTTGAACCACAAATAAGGAAGATTGTACAACAAATGGACATGCCTCCACCAGGTGCCAGACAGACTATGTTGTTCAGTGCCACATTTCCAAAAGAGATACAGAGTCTAGCCTCTGATTTCCTTTCAAATTATGTTTTTCTGGCTGTTGGAAGAGTGGGCTCAATTACCGATTTGATTGTCCAAAGAGTTGAGTACGTTCAAGAATCTGACAAAAGAAGTCACCTCATGGATCTTCTTCATGCGCAGAGGGAAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTCGAGCACTGGTTGTGTCGTAATAGTTTTCCAGCAACTACTATTCACGGTGACAGGACACAACAGGAAAGAGAATTGGCATTAAGATCATTTAAAACTGGCAACACCCCTATATTGGTTGCAACTGATGTGGCTGCACGCGGTCTTGACATTCCTCATGTTGCCCATGTAGTTAACTTTGAGCTTCCTAATGATATTGACGATTATGTACACCGTATTGGAAGAACAGGGCGAGCAGGAAAGAAAGGCCTTGCAACTGCGTTCTTTAATGACAGCAATGCATCACTGGCTAGGCCTTTAGCAGATCTGATGCAAGAAGCGAATCAGGAAGTACCTGATTGGCTCTCTCGGTATGCTGCTCGCTCTACTTTTGGTGGTGGACGGAATCGTCGAAATGGAGGAGGCCATTTTGGTGGCCGTGATTTTCGAAGAGAAGGTTCCTTTAGTAGGGGTGGCTCTGGTTACTACAGTACAGGAAACAACAGTGGTGGATATGGCACTTCTGGTGGATATGGTGGAGGATATGGTCCTGGGGTAACCAGTGCATGGGACTGA 1794 0.4922 MRTSWADLATNSVPENAGASNTTAPSRPVYVPPHLRNRGASASASASTESSSAPPPPNVSTDNNAGSRWGAPRNGWGNRSGGWDRREVNPFEDQENAAEEGGAAFGEEQGNTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHGIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQGQPLQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGARQTMLFSATFPKEIQSLASDFLSNYVFLAVGRVGSITDLIVQRVEYVQESDKRSHLMDLLHAQRENGVQGKQALTLVFVETKKGADALEHWLCRNSFPATTIHGDRTQQERELALRSFKTGNTPILVATDVAARGLDIPHVAHVVNFELPNDIDDYVHRIGRTGRAGKKGLATAFFNDSNASLARPLADLMQEANQEVPDWLSRYAARSTFGGGRNRRNGGGHFGGRDFRREGSFSRGGSGYYSTGNNSGGYGTSGGYGGGYGPGVTSAWD* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g04001 597 CDD SF2_C_DEAD 366 502 - -
Phac1g04001 597 Pfam Helicase conserved C-terminal domain 378 493 IPR001650 -
Phac1g04001 597 MobiDBLite consensus disorder prediction 538 558 - -
Phac1g04001 597 FunFam ATP-dependent RNA helicase RhlB 357 536 - -
Phac1g04001 597 MobiDBLite consensus disorder prediction 1 27 - -
Phac1g04001 597 MobiDBLite consensus disorder prediction 40 68 - -
Phac1g04001 597 Pfam DEAD/DEAH box helicase 160 342 IPR011545 GO:0003676|GO:0005524
Phac1g04001 597 SMART ultradead3 155 369 IPR014001 -
Phac1g04001 597 FunFam Probable ATP-dependent RNA helicase DDX4 99 356 - -
Phac1g04001 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 507 IPR027417 -
Phac1g04001 597 Gene3D - 92 356 IPR027417 -
Phac1g04001 597 SMART helicmild6 412 493 IPR001650 -
Phac1g04001 597 CDD DEADc_DDX3_DDX4 137 360 IPR044763 GO:0003724|GO:0005524
Phac1g04001 597 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 167 354 IPR014001 -
Phac1g04001 597 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 97 532 - -
Phac1g04001 597 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 381 532 IPR001650 -
Phac1g04001 597 MobiDBLite consensus disorder prediction 1 87 - -
Phac1g04001 597 Gene3D - 357 536 IPR027417 -
Phac1g04001 597 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 136 164 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g04001 Phac-Chr1 43713547 43719603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g04001 134 525 Eukaryotic Initiation Factors Gene Family AT3G19760 31.552 3.89e-61 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g04001 K11594 - gmx:100781668 947.962