Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03974 ATGGCGTTTTATAATAAGGTTGGAAATGTCTTGAGGCAGGGTGCCGCTCGCAGCACACAAGCATCTGTTTCATCCATGTTTAATTGTATTCGCTGCATGTCTTCAAGCAAGCTTTTCGTTGGAGGCCTTTCGTACGGAGTTGATGACCAGTCTCTTAGGGACGCATTTGCTGGCTATGGAGAAGTGGTTGAGGCAAGGGTTATAACTGACAGAGACACTGGAAGATCTAGGGGATTTGGATTTGTCAACTTCTCCAGTGACGAGTCTGCAAATTCGGCACTCTCCGCCATGGATGGGCAGGATCTAAATGGGCGAAACATTAGGGTGTCATATGCAAACGATAGACCTTCTGGGCCACGATCTGGTGGCGGTGGTGGTTATGCTTCTCGTAATGGTGGTGGTTGGTGA 408 0.4853 MAFYNKVGNVLRQGAARSTQASVSSMFNCIRCMSSSKLFVGGLSYGVDDQSLRDAFAGYGEVVEARVITDRDTGRSRGFGFVNFSSDESANSALSAMDGQDLNGRNIRVSYANDRPSGPRSGGGGGYASRNGGGW* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03974 135 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Phac1g03974 135 FunFam Glycine-rich RNA-binding protein 2 25 135 - -
Phac1g03974 135 MobiDBLite consensus disorder prediction 96 135 - -
Phac1g03974 135 SMART rrm1_1 37 110 IPR000504 GO:0003723
Phac1g03974 135 Gene3D - 16 135 IPR012677 -
Phac1g03974 135 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Phac1g03974 135 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 33 130 - -
Phac1g03974 135 CDD RRM2_NsCP33_like 37 112 - -
Phac1g03974 135 SUPERFAMILY RNA-binding domain, RBD 33 133 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03974 Phac-Chr1 43494470 43496794 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03974 36 124 Eukaryotic Initiation Factors Gene Family AT4G34110 42.697 4.31e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03974 - - gmx:100527220 196.823