Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03964 ATGATGACGATGGAGGGAACAGGGTCAACAGGTCCGGCACCGTTCCTACTGAAGACATACGAGATGGTGGATGAATCATCCACCGATGAAATAGTATCATGGAGTTCAACCAATAACACCTTCATCGTTTGGAACCCTGCTGAATTCTCTCGTCTTCTTCTTCCCACTTTCTTCAAGCACAACAACTTCTCCAGCTTCATCCGTCAGCTCAATACATATGGATTTAGAAAAGTACACCCTGAGCGATGGGAGTTTGCAAATGAAGATTTTCTGAAAGATCAAAAGCATCTTCTAAACAATATTCACCGCAGAAAACCTATCCACAGTCACTCACTCACACAACCTGTTGTGGATTCAGAAAGGTCTGCATTTGAGGAACAAATACAGAAACTTTCACAGGACAACACCACCATTCAATCCAATATTTTCCGCTTCAAACACCTCCACTCCGCTGCCAACACTCATCTTCAAGATCTACGCCTGCGATTGGATGCCATGGAGGAGAGGCAGCAAAATTTGCTCACCATCTTTCAAAAGGCTCTTCACAATCCTGCTCTTGTTCAACACATCACTCGCAAGATCGAGTCCATGGATTTGCTGGCCTATAACAAGAAAAGGCGATTACCTCCTCAGCTTCATCACCATCACTTGCAGCCTGTTGCTGGAAACACCTTTGTTGAAACTTTTGGAATGGAATTTGGAAATGTTTCTCATCAAGATTTCTCCAATAAACTCGCTCTGGAATTTTCACCTGCTGTTTCAGATACGAACTTGGTGGTGTCATGTAGTACACAGAGTTCAAATGAAGATGGAGAAAGCCCACATAAGATTATGCTACCTCAGATTGCACAAACTGGAGAATCTCTTCCATTTCAGATGCATTCTGCTGAGAGCCCCAAATTGGACTCAAATTATGAAGATGGTGACAGTTATATATCCTGTCTTTTGAATCTATCTCTGGCATCTTCTCCATTACAAGCCAAGAGGAATACATGCACAGATAAATCCGCATCCCTAATAGACTGTCCAAAATTTGGAGAAGGATCAAAATTTTGTGGCAATGATAGTAAAGAATATGATGCTGGAGCTTCTTCAAGCAAAAATCTAAACGAGGTTACTAATTTAGCTGAGGCTCCCCCAACTGCTGCTCCAGTTAGAGTAAATGATGTGTTCTGGGAACAGTTCCTTACTGAAAGACCAGGCTGTGGAGACAATGAAGGCTCAATCTCCACCCACAAAGTAAATGCTTGTGTTGCTGAGCAAGATGAAGAACGCTCAGTTCATGGAATCGCTGGAAATGTTATGGACATGGATCACACACTCTGA 1326 0.4268 MMTMEGTGSTGPAPFLLKTYEMVDESSTDEIVSWSSTNNTFIVWNPAEFSRLLLPTFFKHNNFSSFIRQLNTYGFRKVHPERWEFANEDFLKDQKHLLNNIHRRKPIHSHSLTQPVVDSERSAFEEQIQKLSQDNTTIQSNIFRFKHLHSAANTHLQDLRLRLDAMEERQQNLLTIFQKALHNPALVQHITRKIESMDLLAYNKKRRLPPQLHHHHLQPVAGNTFVETFGMEFGNVSHQDFSNKLALEFSPAVSDTNLVVSCSTQSSNEDGESPHKIMLPQIAQTGESLPFQMHSAESPKLDSNYEDGDSYISCLLNLSLASSPLQAKRNTCTDKSASLIDCPKFGEGSKFCGNDSKEYDAGASSSKNLNEVTNLAEAPPTAAPVRVNDVFWEQFLTERPGCGDNEGSISTHKVNACVAEQDEERSVHGIAGNVMDMDHTL* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03964 441 FunFam Heat shock transcription factor 1 8 105 - -
Phac1g03964 441 Gene3D - 9 105 IPR036388 -
Phac1g03964 441 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac1g03964 441 SUPERFAMILY "Winged helix" DNA-binding domain 11 104 IPR036390 -
Phac1g03964 441 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac1g03964 441 Coils Coil 149 176 - -
Phac1g03964 441 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac1g03964 441 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac1g03964 441 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac1g03964 441 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 4 257 IPR027725 -
Phac1g03964 441 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03964 Phac-Chr1 43453344 43455307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03964 15 439 HSF AT4G13980 46.608 3.48e-117 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phac1g03964 HSF_DNA-bind 4e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03964 K09419 - gmx:100816484 471.085