Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03945 ATGGTTACTTTTAAAAGCTATTTGATTTATAGAAGAACAGAGATCCCTTTCAGAATCTTCAGATTTCGTAGCACTTTCTTTTTATCACTGGAAGCTACATGCTGGCATATATATGGTGGCTTGAGATATTATCATTCTGGGTCAGAATGGGGTAAAAATCAGAAATTGAATCCAAACGAGAAGCCAAACAGGGTGGGACTTTTCTGGGACTTGGACAATAAACCACCCAATGCAATCCCACCTTATGAAGTTGCCAATAAGCTGAGAATAGCTGCATCTTCCTTTGGGATTGTTCGGTACATGGTGGCTTATGCAAATAGCCACACCTTTAGTCATGTTCCTCAATCTGTACGGGAGAAAAGGAAAGAGAGGGAAATGTTGCATCGTTTAAAGAACAAGGGTGTCATCAAGCCAAATGAACCTTATCGTTGTCGGGTTTGTGGGAGAAAGTTTCATACTAATGACAAGCTTGTCAACCATTTCAAGCAACTACATGAGCGCGAGCACGTGAAAAGGATGAGCCAGATTGAGTCTGCTAGAGGGAGCAGGAGGGTGAAGTTAGTGGCTAAGTATTCTATGAAAATGGAAAAGTATAAGAAGGCTGCAAGTGCAATTCTCACACCCAAAGTGGGATATGGTTTGGCAGATGAGCTCACACGGGCTGGGTTTTGGGTTCAAACTGTGTCTGATAAGCTACAAGCTGCAGATCGAGCATTGCAAAGCCACATTGTGGATGTCATGGATCATAGGCAGGTTGAGTGTGTGGTTCTTGTGTCTGATGATTCTGATTTTGTCGATGTGATAAAGGAAGCAAGGCTGCGATGTCTCAAGACGGTTGTCATTGGGGATATTGATGATGGTGTCTTGAAGAGGACTGCTGATACTGCCTTTTCTTGGGTGGAAATTCTGATGGGAAAGGCTAAGAAACAGGCTGTTTCGGTTGTGAAAAACTGGAAGGATCGTGATATTTTAAAGAGGATAGACTGGACATGTAACCCAGATGCGGATGTAAAGAAATTCAATGTGGATGATACCATTGCTGAAACATCTGAATATGATAATTTTGAAGATACCTGTGATGAAGTTGATGATGTCTATAAGGATGACAGAGGTTCTTGGTGGGAATTAGATTCTGACAATGATGTCACAAAGAGACAGTCAGGCTAA 1167 0.419 MVTFKSYLIYRRTEIPFRIFRFRSTFFLSLEATCWHIYGGLRYYHSGSEWGKNQKLNPNEKPNRVGLFWDLDNKPPNAIPPYEVANKLRIAASSFGIVRYMVAYANSHTFSHVPQSVREKRKEREMLHRLKNKGVIKPNEPYRCRVCGRKFHTNDKLVNHFKQLHEREHVKRMSQIESARGSRRVKLVAKYSMKMEKYKKAASAILTPKVGYGLADELTRAGFWVQTVSDKLQAADRALQSHIVDVMDHRQVECVVLVSDDSDFVDVIKEARLRCLKTVVIGDIDDGVLKRTADTAFSWVEILMGKAKKQAVSVVKNWKDRDILKRIDWTCNPDADVKKFNVDDTIAETSEYDNFEDTCDEVDDVYKDDRGSWWELDSDNDVTKRQSG* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03945 388 SUPERFAMILY beta-beta-alpha zinc fingers 138 168 IPR036236 -
Phac1g03945 388 CDD PIN_LabA-like 153 283 - -
Phac1g03945 388 Gene3D Classic Zinc Finger 138 201 - -
Phac1g03945 388 ProSitePatterns Zinc finger C2H2 type domain signature. 144 165 IPR013087 -
Phac1g03945 388 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 170 IPR013087 -
Phac1g03945 388 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 53 383 - -
Phac1g03945 388 SMART c2h2final6 142 165 IPR013087 -
Phac1g03945 388 Gene3D - 55 302 - -
Phac1g03945 388 Pfam NYN domain 215 294 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03945 Phac-Chr1 43348060 43351775 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03945 59 382 C2H2 Transcription Factor Family AT4G12240 58.769 1.02e-138 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac1g03945 NYN 7.5e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03945 - - gmx:100785257 648.662