Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03932 ATGGGAAGAGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAACGAAGGAACGGGCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCAGAGCTTGCTCTCATCATCTTCTCCACTAGAGGAAAGTTGTACGAGTTTTGCAGCACTTCAAGCATGCTGAAAACTTTAGAGAGGTACCAGAAATGTAACTATGGAGCGCCCGAGGCCAATGCATCAACAAAGGAAGCCTTGGTATTGGAGTTAAGCAGTCAACAAGAATATTTGAAGCTGAAGGCACGGTATGAAGCTCTACAACGTTTTCAAAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAATGAGCTTGAATCACTTGAAAGACAGCTAGATTCGTCGTTGAAGCAAATCAGATCAACAAGGACCCAATTCATGCTGGATCAGCTTTCTGATAGTCAACGCAAGGAACACTTGCTAGGTGAGGCAAACACAGCTCTCAGACAAAGGTTGGAAGAGTATCAAATAAATCAATTTCAACTGAATCCCAGTGGTGAAGATATGGGGTATGACCGTCATCCAGGTCAACACCAAGGCGATGCTCTCTTTCAACCATTGGAGTGTGAACCAACATTACAAATGGGGTATCAATTTCCTCTTCATTAA 678 0.4336 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSTRGKLYEFCSTSSMLKTLERYQKCNYGAPEANASTKEALVLELSSQQEYLKLKARYEALQRFQRNLMGEDLGPLSSNELESLERQLDSSLKQIRSTRTQFMLDQLSDSQRKEHLLGEANTALRQRLEEYQINQFQLNPSGEDMGYDRHPGQHQGDALFQPLECEPTLQMGYQFPLH* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03932 225 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Phac1g03932 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac1g03932 225 Coils Coil 128 148 - -
Phac1g03932 225 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Phac1g03932 225 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac1g03932 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Phac1g03932 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phac1g03932 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac1g03932 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac1g03932 225 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Phac1g03932 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac1g03932 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac1g03932 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac1g03932 225 FunFam MADS-box transcription factor 1 13 87 - -
Phac1g03932 225 Pfam K-box region 94 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03932 Phac-Chr1 43253317 43258899 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03932 1 221 MADS-box Gene Family AT1G24260 72.768 1.51e-105 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac1g03932 K-box 1.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03932 - - gmx:547686 385.185