Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03931 ATGGGAAGAGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAACGAAGGAACGGGCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCAGAGCTTGCTCTCATCATCTTCTCCACTAGAGGAAAGTTGTACGAGTTTTGCAGCACTTCAAGCATGCTGAAAACTTTAGAGAGGTACCAGAAATGTAACTATGGAGCGCCCGAGGCCAATGCATCAACAAAGGAAGCCTTGGAGTTAAGCAGTCAACAAGAATATTTGAAGCTGAAGGCACGGTATGAAGCTCTACAACGTTTTCAAAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAATGAGCTTGAATCACTTGAAAGACAGCTAGATTCGTCGTTGAAGCAAATCAGATCAACAAGGACCCAATTCATGCTGGATCAGCTTTCTGATAGTCAACGCAAGGAACACTTGCTAGGTGAGGCAAACACAGCTCTCAGACAAAGGTTGGAAGAGTATCAAATAAATCAATTTCAACTGAATCCCAGTGGTGAAGATATGGGGTATGACCGTCATCCAGGTCAACACCAAGGCGATGCTCTCTTTCAACCATTGGAGTGTGAACCAACATTACAAATGGGATATCGACCTGATCCAGTATCAGTGATAACAGGAGGCCCGAGCATGAATAATTACATGGGAGGATGGTTACCATGA 726 0.4408 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSTRGKLYEFCSTSSMLKTLERYQKCNYGAPEANASTKEALELSSQQEYLKLKARYEALQRFQRNLMGEDLGPLSSNELESLERQLDSSLKQIRSTRTQFMLDQLSDSQRKEHLLGEANTALRQRLEEYQINQFQLNPSGEDMGYDRHPGQHQGDALFQPLECEPTLQMGYRPDPVSVITGGPSMNNYMGGWLP* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03931 241 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Phac1g03931 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac1g03931 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac1g03931 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac1g03931 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac1g03931 241 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac1g03931 241 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Phac1g03931 241 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac1g03931 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phac1g03931 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac1g03931 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac1g03931 241 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Phac1g03931 241 Coils Coil 126 146 - -
Phac1g03931 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Phac1g03931 241 FunFam MADS-box transcription factor 1 13 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03931 Phac-Chr1 43253317 43258899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03931 1 241 MADS-box Gene Family AT1G24260 70.325 7.91e-110 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac1g03931 K-box 1.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03931 - - gmx:547686 420.239