Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03926 ATGCCACCGGGTTTGGAGTATAACATCGATGATCTGTTCCAAGAAGCTAAGAAGCGATGGCTCAAGCCTGTGGAAGTGCTTTGCATTTTACGGAATTACGACATGTGCGAGCTTACCCACCAGCCCCCTCATCAGCCAGCTGGTGGATCCCTATATCTGTTTAATAAAAGAGTCACGCGTTTCTTCCGTAAAGATGGTCATAACTGGCGGAAGAAAAGAGATGGAAGAACTGTGGGAGAAGCACATGAACGGCTTAAGGTTGGAAATGAAGAAATTCTAAACTGCTACTATGCACATGGAGAGGAGAACCGTACTTTTCAGAGACGGAGCTATTGGATATTGGAGCCGGAATATGAGCATATTGTTCTGGTGCATTATAGAGAAACAAGTAAGGGGAAATCCAATTCTGAACCTGTCACACAATTGTCATCGGGTTCCTCTCTTGTTTTTAGCCAGAGTCACAGCCTGAATACTGCTCACAATCCAGGGACATCATCCGTGTTTGGTGATTCATGTGAACCTAATCTCAATTTCTCTAGTCCTGGGTCTTTAGAAGTTACATCTGAAGCACAAGCCTTGCGCCAATTGGAAAAAGAGCTGAATATAAATGAGGACAGCTTCAGTGAAAGGTTGTCTGAACCAAATGATCAAGGGCAACTTTTTGTTATGTATAGTAAAGGACAAGATAACAGTGACACATACTATCATGACTCACTTGATGATTGTCCTGATGGAAAAGAAAAAACTATATACTGGACCGAGGTGCTTGAAGCATGCAAGCCCTTACCTATGACCAATATACCAGATCAATATGTATATGAGGCATTTGAAAATGAAGAGTCATTATTTTCTTCAGGAAGGGAAATGATTGCCAACGTGGAAAACAATCAGTGGCTAAACTCCAACAGTAATAATGTTGAGAACTCTGTTTTTCCACTTCCTCAAGGCGACAATGGAGTCAAATTTCCTCTATTAGAAACTCCCTTAACTACCTCTGACTACTATGAACCATTTTTTGACCAAACCCAAATTCAAGAACCTCTTGGTGGTGTAGATTCAAGCTTGACCGTTGAACAGAAACAGAAATTTACTATTAGGGCAGTCTCCCCAGAATACTGCTATGCCACTGAGACTACAAAGGTTATCATTATTGGATCATTTCTCTATCATCACTTGGATTCTACCTGGGCCTGTATGTTTGGTGATGTTGAAGTTCCTGCTGAGATTATTCAGGATGGCGTAATTTGTTGTGAAGCTCCATCCAATCTTGTTGGGAAGGTTAATCTGTGCATTACTTCCGGAAATAGGGTGCCTTGCAGTGAAGTGAGTGAGTTTGAGTTTCGAAATAAGACTACTAGTTGCACTCGCTGTAATTCGTTGGAAACAGAAGATGGTAGAAGTCCAGAAGATCTGCTATTACTTGTTCGATTTGCGGAGATGCTCAACTCTGCTTCAACCACAGAGTCTGGAAGTCATCTTTCAACAGAACAGAAAGATAGTGATGATTCATGGAGCCATATTATTGACACTCTTCTAGTTGGCACTGGAAAATCATCTGATACTGTTAACTGGCTTCTAGAAGAGCTGCTGAAGGATAAGCTGCAGCGCTGGCTCTCTAACCGATCCAATGAAAGAGATGAAGCGACAGACTGTTCTTTGTCCAAGAAAGAGCAGGGGATTATACACATGGTTTCTGGGTTGGGTTTTGAGTGGGCCCTGAACCCCATTCTCAATTGCGGTGTGAATATAAATTTCCGTGACATCAATGGATGGACCGCCCTTCATTGGGCTGCACGGTTTGGGAGGGAAAAAATGGTTGCTTCACTTATAGCTTCTGGTGCATCTGCTGGAGCGGTGACAGATCCATGTTCACAAAATCCAAGCGGTGAAACTGCTGCATCTGTTGCAGCCTCCCATGGCCATAAGGGACTAGCAGGTTATCTTTCTGAGGTAGACCTAACAAGCCACTTGTCATCCCTCACATTGACAGGGAGTAAGATTTCTGAAGGATCTTCTGAGCTTGCAGCCGAGTTAACTGTCTGTAGTGTCTCTAAAGAAAATCTTGTGGCCAGTGAGGATCAGGTTTCACTAAAAGCTTCCTTGGATGCTGTCAGAAATGCAGCTCAGGCAGCTGCACGGATACAAGATGCTTTTCGTGCACATTCTTTTAGAAAACGGAAACAAAGAGAAGCTGCAGCTGCTGTGGCACGTCTAGAGGGATATTATATTAGTCCAGGTTGCAATGATGATAACATTTCAGTGCTTTCTGCCATGTCAAAACTTAGTTCTCGGAGCTTGGGTGATTACAATTTAGCTGCCTTGTCGATTCAGAAGAGATATCGAGGTTGGAAAGGTCGGAAACAATTCTTAGCATTGCGCCAAAAAGTAGTTAAGATACAGGCCATGGTAAGGGGTTACCAGGCTCGGAAGCATTACAAGATAATATTATGGGCTGTTGGAATCTTTAATAAGGTTGTGCTACGATGGAGGAGAAAACGCGTTGGTATAAGTAGTGTCCGGCAAGAAATGGATTCAAATGAAGAAGAAAGTGACGATGAAGATTTTCTCAACGTGTTCCGAAAAGAGAAAGTAAATGCAGCAGTTGAGAACGCTTTGAAGCGGGTGCTTTCCATGGTCCGTCATGAGGATGCTCGTCACCAATACAGGCGCTTACTTTCATTGTATCGTCAAGCCAAGACTGAAAGTGAGAGCACAATTGATGAAGCACCGTTATCAACTTCGGAAGAGGATGTTCTCCATATGGAAGACGATGATTTGAATATGTTATGGGAAAAGCTTTGGGCTTCGGAAGAGAATGCTCTCAATATGGAAGATTTGAATCTGTCATCACGGGAAAAGTATTGGGGTTAG 2871 0.4295 MPPGLEYNIDDLFQEAKKRWLKPVEVLCILRNYDMCELTHQPPHQPAGGSLYLFNKRVTRFFRKDGHNWRKKRDGRTVGEAHERLKVGNEEILNCYYAHGEENRTFQRRSYWILEPEYEHIVLVHYRETSKGKSNSEPVTQLSSGSSLVFSQSHSLNTAHNPGTSSVFGDSCEPNLNFSSPGSLEVTSEAQALRQLEKELNINEDSFSERLSEPNDQGQLFVMYSKGQDNSDTYYHDSLDDCPDGKEKTIYWTEVLEACKPLPMTNIPDQYVYEAFENEESLFSSGREMIANVENNQWLNSNSNNVENSVFPLPQGDNGVKFPLLETPLTTSDYYEPFFDQTQIQEPLGGVDSSLTVEQKQKFTIRAVSPEYCYATETTKVIIIGSFLYHHLDSTWACMFGDVEVPAEIIQDGVICCEAPSNLVGKVNLCITSGNRVPCSEVSEFEFRNKTTSCTRCNSLETEDGRSPEDLLLLVRFAEMLNSASTTESGSHLSTEQKDSDDSWSHIIDTLLVGTGKSSDTVNWLLEELLKDKLQRWLSNRSNERDEATDCSLSKKEQGIIHMVSGLGFEWALNPILNCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPCSQNPSGETAASVAASHGHKGLAGYLSEVDLTSHLSSLTLTGSKISEGSSELAAELTVCSVSKENLVASEDQVSLKASLDAVRNAAQAAARIQDAFRAHSFRKRKQREAAAAVARLEGYYISPGCNDDNISVLSAMSKLSSRSLGDYNLAALSIQKRYRGWKGRKQFLALRQKVVKIQAMVRGYQARKHYKIILWAVGIFNKVVLRWRRKRVGISSVRQEMDSNEEESDDEDFLNVFRKEKVNAAVENALKRVLSMVRHEDARHQYRRLLSLYRQAKTESESTIDEAPLSTSEEDVLHMEDDDLNMLWEKLWASEENALNMEDLNLSSREKYWG* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03926 956 Coils Coil 881 901 - -
Phac1g03926 956 Gene3D - 525 657 IPR036770 -
Phac1g03926 956 SMART ANK_2a 589 618 IPR002110 GO:0005515
Phac1g03926 956 SMART ANK_2a 628 657 IPR002110 GO:0005515
Phac1g03926 956 Pfam IQ calmodulin-binding motif 794 813 IPR000048 GO:0005515
Phac1g03926 956 Pfam IQ calmodulin-binding motif 772 789 IPR000048 GO:0005515
Phac1g03926 956 FunFam Calmodulin-binding transcription activator 2 768 816 - -
Phac1g03926 956 ProSiteProfiles IQ motif profile. 792 816 IPR000048 GO:0005515
Phac1g03926 956 Pfam Ankyrin repeats (3 copies) 572 649 IPR002110 GO:0005515
Phac1g03926 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 766 819 IPR027417 -
Phac1g03926 956 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Phac1g03926 956 Gene3D Immunoglobulins 358 453 IPR013783 -
Phac1g03926 956 Pfam IPT/TIG domain 364 435 IPR002909 -
Phac1g03926 956 ProSiteProfiles IQ motif profile. 707 736 IPR000048 GO:0005515
Phac1g03926 956 FunFam Calmodulin-binding transcription activator 4 isoform A 471 654 - -
Phac1g03926 956 ProSiteProfiles IQ motif profile. 769 798 IPR000048 GO:0005515
Phac1g03926 956 SMART CG_1_2 12 130 IPR005559 GO:0003677
Phac1g03926 956 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 901 - -
Phac1g03926 956 Gene3D - 769 816 - -
Phac1g03926 956 ProSiteProfiles Ankyrin repeat profile. 589 621 IPR002110 GO:0005515
Phac1g03926 956 ProSiteProfiles Ankyrin repeat region circular profile. 589 615 - -
Phac1g03926 956 SUPERFAMILY E set domains 364 448 IPR014756 -
Phac1g03926 956 SMART iq_5 791 813 IPR000048 GO:0005515
Phac1g03926 956 SMART iq_5 706 728 IPR000048 GO:0005515
Phac1g03926 956 SMART iq_5 768 790 IPR000048 GO:0005515
Phac1g03926 956 SUPERFAMILY Ankyrin repeat 560 650 IPR036770 -
Phac1g03926 956 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03926 Phac-Chr1 43230936 43244903 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03926 252 925 CAMTA Transcription Factor Family AT1G67310 53.924 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Phac1g03926 CG-1 2.1e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03926 K21596 - gmx:100791430 1402.88