Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03920 ATGGAGTGGAATGCAAAATCTCTCGGGCAATGGGACTGGGAGCACTTGTTCTTCTTCAATACAAAAGCAACAGAAAATCCCAGGTTGCCACCAACTGATTGTAGCAACGAAGCAGATCGAGAAATCAATGCTGGGGTGTTGTATCCATCAGGTGGTAGTGCTTGTTCTGGCTCTGAACTAGTGCATGCTTCTTCTCCAAGGAGCTCAAAATCAGCTTCTAACAATTCATCCTCAAATGGGGATAGCAAGGCATCGGTGTTGACTCTGGAAGGTTCTCAGGATGATGATTCCACTGGGAAGAAAGAATTGTGCAGTGGAGAGCCAGTTGAAACATCTCAATCGGCAGAGCCTTCTCCAGTCTCTGGGGAACCCCTTCTGACTCTGAAGCTTGGCAAACGGTTGTACTTTGAGGATGTATCTGCAGGAAGTGATTCCAAGAAAGCATCTTCCTTTGAGGTTCCCATTTCATCAGGAAAGAAATACAAAACCAGTAGTCAGAATTTGCAGCATCCAAGCTGCCAGGTAGAAGGCTGTGGCCTTGACCTCTCATCTGCTAAAGATTACCATCGCAAACACAGAGTATGTGAAGCTCATTCCAAATCCCCTAAGGTGCTTATAGCTGGTTTGGAGCGCAGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCTGTCAGAGTTTGATGACAAAAAAAGAAGCTGCAGAAAACGTCTTTCAGATCACAATGCAAGGCGTCGCAAACCGCCGCCTGACTCCATCCAATTAAATCCATCAGCTTTGTCTCCATCACCCTATGATGGAAGGCAAATAATGAGTCCATTTGCATTTTCAAGAACTGGTACAAACTTGGTGTGGCAGGATGTGCACAGCAGCAAGCTCCCCCAGACAAAAGATTTTCTTCCGAAGCCTGCAAAAGCCAACAATAAGATATCGAGTATTGTCTCTATGTTTTCTGATGATTCTAGTGGCCTTCTAACATCCAGAAGTATAGCAGCCAAGACTATTGTTCCAGGTTTAGAAGATCCGAATCCCATTAGTTCGTGTGATCCAAATGGTGCACAAGATGTGAACCGTGCTCTCTCTCTTCTGTCAAGCAATTCATGGGGTCCATATGAGACTAAGTCGCTATCTCTGGAACGCTCCTCTCGAACGAGTGGCATCACTCAGCCCATAACACAGTCAATGACGCACCACCACCAGCGCTCACCATTTGCTTCCTCTTCAGAATACTGGCACACTGATCATCAACAACAACCATCTCCTTCCACCATGACCATGTGCATCTCATTCTCAGATTATGATACCAGCAATCGTTTTCAAGACTTTCAGCTGTTGAGTGCACCCTATGACTCGGCTTTTCCATGCAACCATCTCGATTGA 1377 0.4582 MEWNAKSLGQWDWEHLFFFNTKATENPRLPPTDCSNEADREINAGVLYPSGGSACSGSELVHASSPRSSKSASNNSSSNGDSKASVLTLEGSQDDDSTGKKELCSGEPVETSQSAEPSPVSGEPLLTLKLGKRLYFEDVSAGSDSKKASSFEVPISSGKKYKTSSQNLQHPSCQVEGCGLDLSSAKDYHRKHRVCEAHSKSPKVLIAGLERRFCQQCSRFHALSEFDDKKRSCRKRLSDHNARRRKPPPDSIQLNPSALSPSPYDGRQIMSPFAFSRTGTNLVWQDVHSSKLPQTKDFLPKPAKANNKISSIVSMFSDDSSGLLTSRSIAAKTIVPGLEDPNPISSCDPNGAQDVNRALSLLSSNSWGPYETKSLSLERSSRTSGITQPITQSMTHHHQRSPFASSSEYWHTDHQQQPSPSTMTMCISFSDYDTSNRFQDFQLLSAPYDSAFPCNHLD* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03920 458 Pfam SBP domain 173 246 IPR004333 GO:0003677
Phac1g03920 458 ProSiteProfiles Zinc finger SBP-type profile. 170 247 IPR004333 GO:0003677
Phac1g03920 458 Gene3D - 163 234 IPR036893 GO:0003677|GO:0005634
Phac1g03920 458 MobiDBLite consensus disorder prediction 57 93 - -
Phac1g03920 458 MobiDBLite consensus disorder prediction 55 123 - -
Phac1g03920 458 SUPERFAMILY SBT domain 171 252 IPR036893 GO:0003677|GO:0005634
Phac1g03920 458 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 58 401 IPR044817 GO:0003677
Phac1g03920 458 MobiDBLite consensus disorder prediction 390 422 - -
Phac1g03920 458 MobiDBLite consensus disorder prediction 236 263 - -
Phac1g03920 458 FunFam Squamosa promoter-binding-like protein 14 164 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03920 Phac-Chr1 43209234 43213502 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03920 1 423 SBP-box Gene Family AT5G43270 37.955 1.30e-63 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phac1g03920 SBP 6.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03920 - - gmx:100796013 706.057