Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03896 ATGGTGAAATACTCCAGAGAACCCGACAATCCTACCAAGTCCTGCAAGGCAAGAGGCGCCGACCTCAGAGTGCATTTCAAGAACACTAGGGAGACTGCGTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCCAAAAGGTACTTGGAAGATGTATTGGCCCACAAACAAGCCATCCCTTTCCGTCGCTTCTGCCGTGGTGTTGGGAGGACTGCTCAGGCCAAGAGCAGACACTCCAATGGACAAGGACGCTGGCCCGTCAAATCAGCTAAATTCATCCTGGATTTGCTGAAGAATGCTGAGAGTAATGCTGAAGTGAAAGGTTTGGACGTAGATGCTCTTTACATTTCACATATCCAGGTTAATCAAGCACAGAAGCAAAGACGCCGTACCTACCGAGCCCATGGAAGAATCAACCCTTACATGTCATCTCCCTGCCATATTGAGCTGATATTATCTGAGAAGGAAGAGCCTGTGAAGAAAGAGCCCGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTCCGTAGTGGTGCTTCATCTTAA 546 0.4872 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKKKGALRSGASS* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03896 181 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Phac1g03896 181 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Phac1g03896 181 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Phac1g03896 181 PANTHER 60S RIBOSOMAL PROTEIN L17 1 173 IPR005721 GO:0003735|GO:0006412|GO:0015934
Phac1g03896 181 NCBIfam 50S ribosomal protein L22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Phac1g03896 181 MobiDBLite consensus disorder prediction 154 181 - -
Phac1g03896 181 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Phac1g03896 181 FunFam 60S ribosomal protein L17 1 175 - -
Phac1g03896 181 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Phac1g03896 181 Gene3D Ribosomal protein L22/L17 1 180 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03896 Phac-Chr1 43108168 43110317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03896 1 174 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 90.805 2.41e-119 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03896 K02880 - gmx:100800781 349.362