Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03887 ATGTGGATAATGGATATTGCCGAGGTTGAAGAAAATCTTTTTGCAGCAAGCGAGGCCAAGTTACATGGAGAAATGTGCAAGTGTCTTTCTGCAATATACTGCAAGATATTGTTATTATTTCCTTCTTTAGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGCTCATTGCATGTAGCCTTAGAAAAGGCAAAGAATGTTCTTCGACACTGCTCAGAGTCTAGTAAACTTTACTTGGCTATAACTGCGGATTCTGTTCTTCTAAAATTTGAAAAGGCTAAATGTGCTCTTGAGGATAGTCTTAAACGGGTGGAAGATATTGTTCCTCAATCTATTGGTTGTCAGATTGATGAAATTGTGAATGAACTTTCAAGTACGGTATTTGCACTTGATCCATCAGAGAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAAAAGGGAAGAAAGCTTAATGACTCTAATGACAGTGGTGAACTTGAATGTTTTCATCTAGCTGCTACTACTATTGGAATCACTTCTTCAAGAGCAGCTCTTGCAGAAAGAAGATCTCTAAAAAAACTTATAGAAAGAGCTCGAGCTGAGGAAGATAGGCGGAAAGAATCAATTATTGCTTACCTTTTACACCTTATGAGGAAATATTCCAAATTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCAGAGATCTCTTGAGGATGGCAGTACTGGTGGTCATTGTCATGTCTTTGACAGACAGCTTTCAAAACTTAGTTCCTTTAACTTTAAGCCAAGTAATAGGGAATCAGGGCAGATGCTCGCTTTGCCTGAAGAGTTACGATGCCCAATATCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGCATAGAGAAATGGTTTAGAGATGGGCACAAGACCTGCCCAAAGACGCAACAGAAACTTTCACATCTTTCTTTGACTCCTAATTACTGTGTTAAGGGTCTTGTGGCTAGTTGGTGTGAACAGAATGGAGTTGCTATTCCTGAAGGCCCTCCTGAATCTCTTGATTTTAACTACTGGAGATTGGCATTATCAGATACTGAATCCACAAATTCAAGATCTGCAAACAGTGTTGGCTCTTGCAAGTTGAAGGGTGTCAAAGTTGTTCCTGTAGAAGAGAGTGGTATCTCAGAGCAAATGGGGGGGAATGCAGCTGAAGATTTTTCTTCACAAGAGGAAGATCATGAACGGTATCTTAGTTTTCTTAAAGTCTTGTCAGAAGGGGACAATTGGAAGAGGAAGTGCAAAGTTGTTGAACAGTTGAGGCTGTTGCTGCGTGATGACGAGGAAGCCAGGATTTTTATTGGGGCTAATGGATTTGTTGATGCACTTATGCAATTTCTGCAATCAGCTGTGCATGAAGGAGATGTGACGGCTCTTGAAAATGGAGCCATGGCTCTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAAATTATGTTATCAGCAGGAATCCTGTCGCTGTTGGAGGACATGATATCAAAAACTAGTTCCTATGGTTGTGTAGCCGCCCTGTATCTGAATCTTTCTTGCCTTGAAGAAGCCAAGGGCGTGATCGGCACGAGTCAGGCTGTCCAGTTCCTTATCCAGATTCTTCACACCAAGACAGAAGTCCAGTGCAAGATAGATTCCCTCCATGCACTCTATAACCTTTCTACTTTGTCCTCCAACATTCCACATCTCCTTTCATCTGGCATCATTGATAGCCTACAATCCCTTCTTGTAGACCATGGTGATTGTACTTTGACAGAAAAATGCCTAGCTGTGTTGATAAATTTGGCTGTTTCTCCAGCAGGAAGAGAGCAAATGATGATGGCTCCTGCACTCATAAGTGCCTTGGCTTCCACGCTGGATACCGGCGAGCTCATGGAGCAGGAGCAAGCAGCCTCTTGTCTCCTGATTTTGTGTAACAGAAGTGAGCAATGTTGTGAGATGGTCTTGCAAGAAGGGGTTATCCCTGCGTTGGTGTCATTAACAGTGAATGGAACCTCGAGAGGAAGAGAAAAGGCTCAGAAACTCTTGATGGTCTTCCGAGAGCAGCGACAACGGGAGCATTCACCTGTTAACACAAATGAATGTGAACCTGAAAGTAGTGATTTGTCTATGCCTCCTCCTGAAACGAAACCGTTATGCAAATCAATATCTAGGAGAAAGGTGGTAGGGAAAGCTATTAGCTTTCTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAA 2307 0.4196 MWIMDIAEVEENLFAASEAKLHGEMCKCLSAIYCKILLLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLRHCSESSKLYLAITADSVLLKFEKAKCALEDSLKRVEDIVPQSIGCQIDEIVNELSSTVFALDPSEKQVGDDLIALLQKGRKLNDSNDSGELECFHLAATTIGITSSRAALAERRSLKKLIERARAEEDRRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRSLEDGSTGGHCHVFDRQLSKLSSFNFKPSNRESGQMLALPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFRDGHKTCPKTQQKLSHLSLTPNYCVKGLVASWCEQNGVAIPEGPPESLDFNYWRLALSDTESTNSRSANSVGSCKLKGVKVVPVEESGISEQMGGNAAEDFSSQEEDHERYLSFLKVLSEGDNWKRKCKVVEQLRLLLRDDEEARIFIGANGFVDALMQFLQSAVHEGDVTALENGAMALFNLAVNNNRNKEIMLSAGILSLLEDMISKTSSYGCVAALYLNLSCLEEAKGVIGTSQAVQFLIQILHTKTEVQCKIDSLHALYNLSTLSSNIPHLLSSGIIDSLQSLLVDHGDCTLTEKCLAVLINLAVSPAGREQMMMAPALISALASTLDTGELMEQEQAASCLLILCNRSEQCCEMVLQEGVIPALVSLTVNGTSRGREKAQKLLMVFREQRQREHSPVNTNECEPESSDLSMPPPETKPLCKSISRRKVVGKAISFLWKSKSYSVYQC* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03887 768 Gene3D - 413 715 IPR011989 -
Phac1g03887 768 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Phac1g03887 768 Coils Coil 178 198 - -
Phac1g03887 768 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 514 IPR000225 GO:0005515
Phac1g03887 768 SUPERFAMILY RING/U-box 272 357 - -
Phac1g03887 768 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Phac1g03887 768 PANTHER U BOX DOMAIN-CONTAINING 24 708 - -
Phac1g03887 768 Pfam U-box domain 283 352 IPR003613 GO:0004842|GO:0016567
Phac1g03887 768 SMART arm_5 542 583 IPR000225 GO:0005515
Phac1g03887 768 SMART arm_5 626 667 IPR000225 GO:0005515
Phac1g03887 768 SMART arm_5 584 625 IPR000225 GO:0005515
Phac1g03887 768 SMART arm_5 457 501 IPR000225 GO:0005515
Phac1g03887 768 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 356 IPR013083 -
Phac1g03887 768 SUPERFAMILY ARM repeat 430 709 IPR016024 -
Phac1g03887 768 CDD RING-Ubox_PUB 283 335 IPR045210 -
Phac1g03887 768 MobiDBLite consensus disorder prediction 711 737 - -
Phac1g03887 768 MobiDBLite consensus disorder prediction 227 246 - -
Phac1g03887 768 FunFam RING-type E3 ubiquitin transferase 281 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03887 Phac-Chr1 43066393 43071342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03887 4 767 U-box Gene Family AT1G24330 64.010 0.0 994
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03887 - - gmx:100804344 1303.89