Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03845 ATGGATAATGGGTGTTTCTCTTCCCCTCGACGTGATTTCCCTGCTGGCTTAAGAGTTCTCGTTGTGGATGATGATCCTACGTGGCTCAAGATCCTTGAGAAGATGCTCAAGAAGTGCAATTATGAAGTGACTACATGTTGTTTAGCAAGGCATGCTCTAAACTTGCTTCGTGAAAGGAAGGATGGATATGATATAGTGATCAGCGATGTAAACATGCCTGACATGGATGGTTTTAAACTCCTTGAGCATGTTGGGCTTGAGATGGATCTTCCTGTGATTATGATGTCTGTGGATGGGGAAACAAGCAGGGTCATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAACTGCGAAATATATGGCAGCATGTCTATAGAAAAAGGATACACGAGGCTAAAGAATTTGAAAGCTTTGAGAGTTTTGAGAGCATTCACTTAATGACAAATGGATCAGAGCTATCAGATGAGGGGAACCTGTTTGCTGTAGAAGATGTGACCTCAACAAAGAAAAGAAAAGATGCAGATAACAAACACGATGACAAAGAATGTATGGATCCATCATCTACCAAGAAAGCTAGAGTAGTCTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCTGTGAATCAGATTGGATTTGATAAAGTTGGGCCCAAGAAAATACTAGATCTGATGAATGTTCCATGGCTGACCAGAGAGAATGTTGCTAGCCACTTGCAGAAATACCGGCTTTATTTGATTAGGATTCAGAAAGAAAACGACCGAAGATCTACCTCAAGCGGAATGAAGCATTCAGATTTTCCTTCGAAAGATCTGGGAAGTTTTGGATTTCAAAACCCAGTAAACAAGCAACAAAATGATGTTTCAATTGACAGCTACAATTATTCGGATGGATCATTACAGCTGCAGAACCTGGAAAATAAAAGTCATGAAGGTGATAAGGGAACTGTTTCACAGTTCACCATAGCAAAAAAAGGAAGGCTTTTGAGAGAGAGTTCAAGGGTTAGCCTTCAGCAACCTTTTTCCCAGTCAGAAGGAAGCCATGCAGTGTTTGATTGCTCCATGCCAACACAGTACTCTTGGACTGAAGTTCCACACACGCAACTCAAAGAAGAACACAAGTCACTTGTGCATTTAGAAGATAGCTTCAATCAGATGCCATCACAGGGTAAGCAGCATCCCATCCAAGTTGATCAATCACAATCAGTTGGTTCAATTAGTTCAGTTCCATCTATAACGGAGGAAGGGGTTGCTGCTTGTATAGAAGCAAAACCTTTGTTTTCAGATTTCAAGAATGATCAATCCAGTTCTGTGAATTCAATAGGGAATGCAGTTGACACCTTTCCAATTCAACCAGGAAGTCTTGTTATGAATGCTCAATCTTTAGCCAGTTCAACTACAAATTCAGGATTGAAAGCACATGGATATAACAATCTCAGTTGCATTTCTGATCTGGAAATTTACCAAAGAAACCTTCTTTTGGGAGCTTCTGCACCTTTGGATGAGGACTTGCATTTCCATTGGCTACAAGGTGAATGTTATAACATGAACTTTGGTCTGCAGAATATAGGAATGCCAGAATATTATGATCCAGGACTTATTGCAGAAGCTCCGAGTCATCTATATGATTCATCCGATTACTCGGTTATAGATCAAGGTCTATTCATAGCATGA 1698 0.4022 MDNGCFSSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVYRKRIHEAKEFESFESFESIHLMTNGSELSDEGNLFAVEDVTSTKKRKDADNKHDDKECMDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLIRIQKENDRRSTSSGMKHSDFPSKDLGSFGFQNPVNKQQNDVSIDSYNYSDGSLQLQNLENKSHEGDKGTVSQFTIAKKGRLLRESSRVSLQQPFSQSEGSHAVFDCSMPTQYSWTEVPHTQLKEEHKSLVHLEDSFNQMPSQGKQHPIQVDQSQSVGSISSVPSITEEGVAACIEAKPLFSDFKNDQSSSVNSIGNAVDTFPIQPGSLVMNAQSLASSTTNSGLKAHGYNNLSCISDLEIYQRNLLLGASAPLDEDLHFHWLQGECYNMNFGLQNIGMPEYYDPGLIAEAPSHLYDSSDYSVIDQGLFIA* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03845 565 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Phac1g03845 565 Gene3D - 17 188 - -
Phac1g03845 565 CDD REC_typeB_ARR-like 19 133 - -
Phac1g03845 565 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Phac1g03845 565 PIRSF RR_ARR_type-B 2 533 IPR017053 GO:0003677|GO:0003700|GO:0009736
Phac1g03845 565 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 333 IPR045279 GO:0009736
Phac1g03845 565 MobiDBLite consensus disorder prediction 263 286 - -
Phac1g03845 565 SMART REC_2 17 129 IPR001789 GO:0000160
Phac1g03845 565 SUPERFAMILY CheY-like 16 145 IPR011006 -
Phac1g03845 565 FunFam Two-component response regulator 195 258 - -
Phac1g03845 565 FunFam Two-component response regulator 17 172 - -
Phac1g03845 565 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Phac1g03845 565 Gene3D - 195 258 - -
Phac1g03845 565 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Phac1g03845 565 SUPERFAMILY Homeodomain-like 197 254 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03845 Phac-Chr1 42897867 42902522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03845 13 257 Response Regulator Gene Family AT2G25180 56.250 1.58e-81 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Phac1g03845 Response_reg 1.5e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03845 K14491 - gmx:100797421 955.281