Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03827 ATGTACCAATTTTTTTTTATAGATATGAGGCACGGTTTTCCAGTTTGTTCCCTATATATAATGCAAAATGTCCTTACATTTCCTCACAAGCACACTATTCCTTTATCCTCCTTGCTGTTCAGTACTGTTACTCCTATAGAGTTTTTGATTCTGATTGCAGATCAAGCAGTTATGGAAATTCCAATTCCACTGTCATTTATGCTACTCTTTCTACTGATTGTACCTTCCTGCATTTGTTCTTCCCCACTTCAAGATCCTGAACTAGTGGTGGAAGATGTACAAAAGAGCATTAATGCCTCAAGGAGGAACTTAGCATTTCTGTCTTGTGGAACGGGGAACCCCATTGATGATTGTTGGAGATGTGATGCCAATTGGGAGAAGAATCGAAAGAATTTAGCAGAGTGTTCAATTGGGTTTGGTAAGCATGCAATTGGAGGGAGGGATGGGAAAATATATGTGGTGAGTGACCCTGGTGATCACCCTGTGAATCCCAAGCCAGGAACACTTAGATATGGTGTGATCCAAGAGGAACCACTGTGGATCATTTTCAAGCGTGACATGGTGATTCGTTTGAAGCAAGAGCTTATGATGAACTCATTCAAGACGATTGATGGAAGAGGGGCAAGTGTGCACATTGCTGGTGGCCCTTGCATTACCATACAGTATGTGACCAACATTATCATTCATGGGATTAACATTCATGACTGCAAACAAGGTGGGAATGCCTATGTGAGAGACTCCCCCAGCCACTATGGGTGGAGGACTCTCTCAGATGGTGATGGCATCTCCATCTTTGGTGGCAGTCATGTTTGGGTGGATCACTGTTCTCTCTCCAATTGCCGTGATGGCCTCATTGATGCCATCCATGGATCCACTGCCATTACCATCTCCAACAATTACATGACCCACCATAACAAGGTCATGCTTTTGGGCCACAGTGATACTTTCACTAGGGACAAGAACATGCAAGTCACCATTGCCTTCAACCATTTTGGAGAAGGACTGGTACAGAGAATGCCAAGATGTAGGTATGGATACTTCCATGTGGTGAACAATGATTACACCCACTGGAAAATGTATGCCATAGGGGGAAGTGCTGCTCCAACCATCAATAGCCAAGGGAATAGATTTCTTGCTCCCAATGACCATACCTTCAAAGAGGTGACAAAGAGGGAGAATTCAGCACAGAGCAAATGGAAGAACTGGAATTGGAGGTCAACGGGAGATTTGATGTTAAACGGTGCATTCTTCACTGCATCAGGAGCAGGTGCATCTTCAAGCTATGCAAGAGCATCAAGTTTGGCAGCAAAACCATCTTCACTTGTCAGTTCTATAACAGCATCAGCAGGATCACTTACATGTAGAAAGGGTTCACGTTGCTGA 1383 0.4382 MYQFFFIDMRHGFPVCSLYIMQNVLTFPHKHTIPLSSLLFSTVTPIEFLILIADQAVMEIPIPLSFMLLFLLIVPSCICSSPLQDPELVVEDVQKSINASRRNLAFLSCGTGNPIDDCWRCDANWEKNRKNLAECSIGFGKHAIGGRDGKIYVVSDPGDHPVNPKPGTLRYGVIQEEPLWIIFKRDMVIRLKQELMMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAYVRDSPSHYGWRTLSDGDGISIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTRDKNMQVTIAFNHFGEGLVQRMPRCRYGYFHVVNNDYTHWKMYAIGGSAAPTINSQGNRFLAPNDHTFKEVTKRENSAQSKWKNWNWRSTGDLMLNGAFFTASGAGASSSYARASSLAAKPSSLVSSITASAGSLTCRKGSRC* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03827 460 PANTHER PECTATE LYASE 18-RELATED 84 458 IPR045032 GO:0030570
Phac1g03827 460 PRINTS Pollen allergen Amb family signature 431 454 IPR018082 -
Phac1g03827 460 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
Phac1g03827 460 PRINTS Pollen allergen Amb family signature 158 183 IPR018082 -
Phac1g03827 460 PRINTS Pollen allergen Amb family signature 402 426 IPR018082 -
Phac1g03827 460 PRINTS Pollen allergen Amb family signature 135 152 IPR018082 -
Phac1g03827 460 PRINTS Pollen allergen Amb family signature 258 279 IPR018082 -
Phac1g03827 460 PRINTS Pollen allergen Amb family signature 360 379 IPR018082 -
Phac1g03827 460 PRINTS Pollen allergen Amb family signature 194 210 IPR018082 -
Phac1g03827 460 SMART amb_all 186 383 IPR002022 -
Phac1g03827 460 FunFam Pectate lyase 112 453 - -
Phac1g03827 460 SUPERFAMILY Pectin lyase-like 97 454 IPR011050 -
Phac1g03827 460 Gene3D - 112 453 IPR012334 -
Phac1g03827 460 Pfam Pectate lyase 194 377 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03827 Phac-Chr1 42821016 42823534 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03827 64 460 Polysaccharide Lyase AT5G63180 77.475 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03827 K01728 - gmx:100816256 780.4