Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03826 ATGGCATTTTCATTCACATTCATCTTCCACCTTTTGCTTCTTTCCTCATCTGTGATTTATGTTTCTCCTTCTCCTGTTCAAGATCCTGAATTGGTGGTCCAGGAAGTGGAAAAGAGAAACTTGGGGTATCTTTCTTGTGGGACGGGGAACCCCATTGATGACTGTTGGAGGTGCGACCCCAACTGGGAAAGGAACCGCAGGCGTCTAGCTAGTTGTGCTATTGGGTTCGGCAAGAATGCCATTGGAGGAAAAGATGGCAAACTATATACAGTGACTGACTCTAGTGATAACCCTATGAACCCTAAACCAGGTACACTGAGACATGCTGTTATCCAACAAGAGCCTTTGTGGATAATTTTCAAGCATGACATGGTGATAAAGCTCCACATGGATCTCCTTGTTAATTCTTACAAAACCATTGATGGAAGAGGAGCAACCATCCACATTGCAGGAGGGCCTTGCATCAAAGTGCACAAGAAGAGGAATATCATAATTCATGGAATACACATTCATGATTGCAAACGTGGTGGCAGTGGCTATGTGAGTGATTTTCCTAACCATCGCAGTTGGAGTGCAAGATCGGACGGTGATGGGATCACTATCTTTGGTGGGAGCCATGTTTGGGTGGACCATTGCTCCTTGTCAAACTGTTTTGATGGCCTCATTGATGTTGTTCATGGGTCAACGGCCATCACCATTTCCAACAATTATATGACACACCATAACAAAGTCATGCTCTTGGGCCACAGTGATTCCTATGAAGATGACAAGAACATGCAAGTCACCATAGCCTTCAACCATTTTGGAGAAGGGCTTGGAGGGAGAATGCCTAGATGCAGGTTTGGATACTTTCATGTGGTGAACAACGATTACAGACATTGGCAGCATTACGCAATAGGTGGGAGTTCATCCCCAACTATTTTCAGCCAAGGCAATAGATTTCTTGCTCCAAATAATGAAGAGCATAAAGAGGTGACGAAACATTTTAAATCATCAAAAGGAGAGTGGAGGAAATGGAATTGGAGGTCTGAAGGAGATCTGATGTTGAATGGGGCGTTCTTCACAGCGTCCGGGGCAGGAGCAACAGCTAGATATGATAGGGCGTCAAGCATGGCAGCAAGACCACCGCTGCTTGTGGCTTCAATCACGGCGGGGGCTGGTGCGCTTAGATGCAAAAATGGCCACCTATGCGCCTAG 1197 0.4578 MAFSFTFIFHLLLLSSSVIYVSPSPVQDPELVVQEVEKRNLGYLSCGTGNPIDDCWRCDPNWERNRRRLASCAIGFGKNAIGGKDGKLYTVTDSSDNPMNPKPGTLRHAVIQQEPLWIIFKHDMVIKLHMDLLVNSYKTIDGRGATIHIAGGPCIKVHKKRNIIIHGIHIHDCKRGGSGYVSDFPNHRSWSARSDGDGITIFGGSHVWVDHCSLSNCFDGLIDVVHGSTAITISNNYMTHHNKVMLLGHSDSYEDDKNMQVTIAFNHFGEGLGGRMPRCRFGYFHVVNNDYRHWQHYAIGGSSSPTIFSQGNRFLAPNNEEHKEVTKHFKSSKGEWRKWNWRSEGDLMLNGAFFTASGAGATARYDRASSMAARPPLLVASITAGAGALRCKNGHLCA* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03826 398 FunFam Pectate lyase 49 390 - -
Phac1g03826 398 Pfam Pectate lyase 134 314 IPR002022 -
Phac1g03826 398 SMART amb_all 123 320 IPR002022 -
Phac1g03826 398 PRINTS Pollen allergen Amb family signature 368 391 IPR018082 -
Phac1g03826 398 PRINTS Pollen allergen Amb family signature 72 89 IPR018082 -
Phac1g03826 398 PRINTS Pollen allergen Amb family signature 131 147 IPR018082 -
Phac1g03826 398 PRINTS Pollen allergen Amb family signature 275 294 IPR018082 -
Phac1g03826 398 PRINTS Pollen allergen Amb family signature 195 216 IPR018082 -
Phac1g03826 398 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Phac1g03826 398 PRINTS Pollen allergen Amb family signature 95 120 IPR018082 -
Phac1g03826 398 PRINTS Pollen allergen Amb family signature 339 363 IPR018082 -
Phac1g03826 398 SUPERFAMILY Pectin lyase-like 50 388 IPR011050 -
Phac1g03826 398 Gene3D - 49 390 IPR012334 -
Phac1g03826 398 PANTHER PECTATE LYASE 18-RELATED 27 394 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03826 Phac-Chr1 42813137 42816172 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03826 3 397 Polysaccharide Lyase AT5G63180 66.995 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03826 K01728 - gmx:100801136 742.651