Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03815 ATGGGAGAAACCGGAATCATTGTCCGGTTGGAGGGAAGCTTAGACCCAAGAGCAGAAGAGTTCAGACCAACCATAAGCAACCCTCTTGTTCAATGCCATTGGTACCCTGTTCCTCTGCCTCTACCCTTACCATTACCCTTACCCTTCCCACACCCTCTTCCTCCGCCGCCGCCGCCGCACCTCTCCACCTCCTCCACCCGCTCCCTCCTCCTCACGCCGCTCCCCTTCACCTCCGACTCCGCCCTACGCGCCGAACTCCAGGCCTTCGGCGACGTCAGAGCCCTCCAAACGGAAGCCCTCCGCCACGGAATCCTCATCGTCCACTTCTACGACCTCCGCCATGCAGAGTCCGCCTTCGCCGCCATCCGCTCCATGCACCACCACTTCCCTCAATTCGCCCCCGCCGCCCCCGGCCTCCTCTCCGCCCGTCCCGTCTCCGCCCACTACGTCCTCCCCTCCTCCTCCTCCACCCCAGACGCCCACAACCAAGGCACCCTCGTCGTCTTCAACTTGGACCCCCACCTCACCACCGACCACCTCCGTCGACTCTTCCACCCTTTTGGTCCCATCAAGGAATTGAGAGATACGCCATGGAAAAAGAATCAAAGATTTGTGGAGTTCTTCGACACGAGAGACGCTGCCAAGGCCTTGAAGCACATGAATGGCAAGCAAATTCACGGAAAACCCATCATCATCGAGTTCAGCAGACCCGGTGGTCACACTCGCAAGTTCTTCCATCACTCTGCTTCATCCAAAGCCACGCCTCTCGATTTCAATGCCCCACCACGTCGTTTTGATGCTCCTCGCCTGCACAGCTCCCACCCTCAATTGCCTCGCAAGAAATCATTGGAAAGTCCCGTCAAGGTTGAAGAATCTGTGGATGAGGCAATTGGGTCAATGAGTTTGACCGGGGATGTTGGAAATGGGGTTGAAGAGCAGCAGCATTCACATGGTGGTGGCCCCCCAAGGAGGAATCTTAGCAGAAAGCAGAATTGCGAGACCACGCTAGTGGTAGCAACCACAAAGCAACAGCAGCAACAACAACCACAGCAACTACCTAGAAGTAGGCACTGGAAGGGAAAGCAAGCAAAGAAACACGAAGCTCGCTTTCTAATAAAAGAGGATGCCATTGTCGAGTCTGGTCCCAAAGATCCTCGAACTACTGTCATGATCAAAAACATTCCCAACAAGTACAGTCAGAAGTTGCTATTAAACATGCTGGATAATCACTGCATACACTGCAACGAGCAGGTTGCAGACGGCGATGAGCAGCCTCTATCCTCCTACGACTTCGTGTACCTCCCCATTGATTTCAACAACAAGTGCAACGTGGGATATGGGTTCGTGAACATGACATCCTCGGAGGCCACACTCAGGCTCTACAAGGCCTTCCACCTTCAGCATTGGGAGGTTTTCAACTCAAGAAAAATCTGTGAAGTCACCTATGCAAGAGTTCAGGGTTTGGAGGCATTGAAGGAGCACTTTAAGAACTCAAAGTTCCCATGCGAGATGGAGCATTACCTGCCAGTGGTGTTTTCACCACCTCGAGATGGGAGGGAACTCACTGAGCCACTTCCATTAGTGGGGAACAGCAGCAACAGCAAGCAGCAGCAGCACCAACCACCCGTTTCAATTCCAAGCTGCGATGATAATGGCGGTGATGACGTGTCAAGCAGCAAAAGCGGCGGCGTGTGTGATGATGATGACACGAATGCAGAAGTGGATGGTGGAGGAAGCCTAGTAAATTGA 1749 0.538 MGETGIIVRLEGSLDPRAEEFRPTISNPLVQCHWYPVPLPLPLPLPLPFPHPLPPPPPPHLSTSSTRSLLLTPLPFTSDSALRAELQAFGDVRALQTEALRHGILIVHFYDLRHAESAFAAIRSMHHHFPQFAPAAPGLLSARPVSAHYVLPSSSSTPDAHNQGTLVVFNLDPHLTTDHLRRLFHPFGPIKELRDTPWKKNQRFVEFFDTRDAAKALKHMNGKQIHGKPIIIEFSRPGGHTRKFFHHSASSKATPLDFNAPPRRFDAPRLHSSHPQLPRKKSLESPVKVEESVDEAIGSMSLTGDVGNGVEEQQHSHGGGPPRRNLSRKQNCETTLVVATTKQQQQQQPQQLPRSRHWKGKQAKKHEARFLIKEDAIVESGPKDPRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQVADGDEQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSSEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGRELTEPLPLVGNSSNSKQQQHQPPVSIPSCDDNGGDDVSSSKSGGVCDDDDTNAEVDGGGSLVN* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03815 582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 237 IPR000504 GO:0003723
Phac1g03815 582 FunFam Protein MEI2-like 1 163 256 - -
Phac1g03815 582 MobiDBLite consensus disorder prediction 526 558 - -
Phac1g03815 582 Gene3D - 327 492 IPR012677 -
Phac1g03815 582 MobiDBLite consensus disorder prediction 327 355 - -
Phac1g03815 582 CDD RRM3_EAR1_like 386 487 IPR034458 -
Phac1g03815 582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 230 IPR000504 GO:0003723
Phac1g03815 582 Gene3D - 157 244 IPR012677 -
Phac1g03815 582 MobiDBLite consensus disorder prediction 519 582 - -
Phac1g03815 582 MobiDBLite consensus disorder prediction 277 291 - -
Phac1g03815 582 Pfam RNA recognition motif 2 386 496 IPR007201 -
Phac1g03815 582 MobiDBLite consensus disorder prediction 247 361 - -
Phac1g03815 582 SMART rrm1_1 165 233 IPR000504 GO:0003723
Phac1g03815 582 FunFam Terminal EAR1-like 1 334 492 - -
Phac1g03815 582 SUPERFAMILY RNA-binding domain, RBD 165 465 IPR035979 GO:0003676
Phac1g03815 582 PANTHER RNA RECOGNITION MOTIF-CONTAINING 364 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03815 Phac-Chr1 42774916 42778161 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03815 166 236 Eukaryotic Initiation Factors Gene Family AT2G23350 38.667 7.76e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03815 - - vum:124847631 974.156