Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03814 ATGGGAGAAACCGGAATCATTGTCCGGTTGGAGGGAAGCTTAGACCCAAGAGCAGAAGAGTTCAGACCAACCATAAGCAACCCTCTTGTTCAATGCCATTGGTACCCTGTTCCTCTGCCTCTACCCTTACCATTACCCTTACCCTTCCCACACCCTCTTCCTCCGCCGCCGCCGCCGCACCTCTCCACCTCCTCCACCCGCTCCCTCCTCCTCACGCCGCTCCCCTTCACCTCCGACTCCGCCCTACGCGCCGAACTCCAGGCCTTCGGCGACGTCAGAGCCCTCCAAACGGAAGCCCTCCGCCACGGAATCCTCATCGTCCACTTCTACGACCTCCGCCATGCAGAGTCCGCCTTCGCCGCCATCCGCTCCATGCACCACCACTTCCCTCAATTCGCCCCCGCCGCCCCCGGCCTCCTCTCCGCCCGTCCCGTCTCCGCCCACTACGTCCTCCCCTCCTCCTCCTCCACCCCAGACGCCCACAACCAAGGCACCCTCGTCGTCTTCAACTTGGACCCCCACCTCACCACCGACCACCTCCGTCGACTCTTCCACCCTTTTGGTCCCATCAAGGAATTGAGAGATACGCCATGGAAAAAGAATCAAAGATTTGTGGAGTTCTTCGACACGAGAGACGCTGCCAAGGCCTTGAAGCACATGAATGGCAAGCAAATTCACGGAAAACCCATCATCATCGAGTTCAGCAGACCCGGTGGTCACACTCGCAAGTTCTTCCATCACTCTGCTTCATCCAAAGCCACGCCTCTCGATTTCAATGCCCCACCACGTCGTTTTGATGCTCCTCGCCTGCACAGCTCCCACCCTCAATTGCCTCGCAAGAAATCATTGGAAAGTCCCGTCAAGGTTGAAGAATCTGTGGATGAGGCAATTGGGTCAATGAGTTTGACCGGGGATGTTGGAAATGGGGTTGAAGAGCAGCAGCATTCACATGGTGGTGGCCCCCCAAGGAGGAATCTTAGCAGAAAGCAGAATTGCGAGACCACGCTAGTGGTAGCAACCACAAAGCAACAGCAGCAACAACAACCACAGCAACTACCTAGAAGTAGGCACTGGAAGGGAAAGCAAGCAAAGAAACACGAAGCTCGCTTTCTAATAAAAGAGGATGCCATTGTCGAGTCTGGTCCCAAAGATCCTCGAACTACTGTCATGATCAAAAACATTCCCAACAAGTACAGTCAGAAGTTGCTATTAAACATGCTGGATAATCACTGCATACACTGCAACGAGCAGGTTGCAGACGGCGATGAGCAGCCTCTATCCTCCTACGACTTCGTGTACCTCCCCATTGATTTCAAGTATAAAATTTTTAATCTTTTTTCCTTAAACCAAAACCCATTAATCAAATCACCCTGCAAATGTGATTTATTGTGTTTTGGAACAGCAACAAGTGCAACGTGGGATATGGGTTCGTGA 1434 0.5321 MGETGIIVRLEGSLDPRAEEFRPTISNPLVQCHWYPVPLPLPLPLPLPFPHPLPPPPPPHLSTSSTRSLLLTPLPFTSDSALRAELQAFGDVRALQTEALRHGILIVHFYDLRHAESAFAAIRSMHHHFPQFAPAAPGLLSARPVSAHYVLPSSSSTPDAHNQGTLVVFNLDPHLTTDHLRRLFHPFGPIKELRDTPWKKNQRFVEFFDTRDAAKALKHMNGKQIHGKPIIIEFSRPGGHTRKFFHHSASSKATPLDFNAPPRRFDAPRLHSSHPQLPRKKSLESPVKVEESVDEAIGSMSLTGDVGNGVEEQQHSHGGGPPRRNLSRKQNCETTLVVATTKQQQQQQPQQLPRSRHWKGKQAKKHEARFLIKEDAIVESGPKDPRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQVADGDEQPLSSYDFVYLPIDFKYKIFNLFSLNQNPLIKSPCKCDLLCFGTATSATWDMGS* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03814 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 230 IPR000504 GO:0003723
Phac1g03814 477 SUPERFAMILY RNA-binding domain, RBD 148 243 IPR035979 GO:0003676
Phac1g03814 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 237 IPR000504 GO:0003723
Phac1g03814 477 SMART rrm1_1 165 233 IPR000504 GO:0003723
Phac1g03814 477 FunFam Protein MEI2-like 1 163 256 - -
Phac1g03814 477 Gene3D - 154 249 IPR012677 -
Phac1g03814 477 MobiDBLite consensus disorder prediction 247 360 - -
Phac1g03814 477 Pfam RNA recognition motif 2 386 442 IPR007201 -
Phac1g03814 477 MobiDBLite consensus disorder prediction 327 355 - -
Phac1g03814 477 PANTHER RNA RECOGNITION MOTIF-CONTAINING 77 363 - -
Phac1g03814 477 MobiDBLite consensus disorder prediction 277 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03814 Phac-Chr1 42774916 42778161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03814 165 236 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 4.00e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03814 - - vum:124847631 736.102