Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03813 ATGGGAGAAACCGGAATCATTGTCCGGTTGGAGGGAAGCTTAGACCCAAGAGCAGAAGAGTTCAGACCAACCATAAGCAACCCTCTTGTTCAATGCCATTGGTACCCTGTTCCTCTGCCTCTACCCTTACCATTACCCTTACCCTTCCCACACCCTCTTCCTCCGCCGCCGCCGCCGCACCTCTCCACCTCCTCCACCCGCTCCCTCCTCCTCACGCCGCTCCCCTTCACCTCCGACTCCGCCCTACGCGCCGAACTCCAGGCCTTCGGCGACGTCAGAGCCCTCCAAACGGAAGCCCTCCGCCACGGAATCCTCATCGTCCACTTCTACGACCTCCGCCATGCAGAGTCCGCCTTCGCCGCCATCCGCTCCATGCACCACCACTTCCCTCAATTCGCCCCCGCCGCCCCCGGCCTCCTCTCCGCCCGTCCCGTCTCCGCCCACTACGTCCTCCCCTCCTCCTCCTCCACCCCAGACGCCCACAACCAAGGCACCCTCGTCGTCTTCAACTTGGACCCCCACCTCACCACCGACCACCTCCGTCGACTCTTCCACCCTTTTGGTCCCATCAAGGAATTGAGAGATACGCCATGGAAAAAGAATCAAAGATTTGTGGAGTTCTTCGACACGAGAGACGCTGCCAAGGCCTTGAAGCACATGAATGGCAAGCAAATTCACGGAAAACCCATCATCATCGAGTTCAGCAGACCCGGTGGTCACACTCGCAAGTTCTTCCATCACTCTGCTTCATCCAAAGCCACGCCTCTCGATTTCAATGCCCCACCACGTCGTTTTGATGCTCCTCGCCTGCACAGCTCCCACCCTCAATTGCCTCGCAAGAAATCATTGGAAAGTCCCGTCAAGGTTGAAGAATCTGTGGATGAGGCAATTGGGTCAATGAGTTTGACCGGGGATGTTGGAAATGGGGTTGAAGAGCAGCAGCATTCACATGGTGGTGGCCCCCCAAGGAGGAATCTTAGCAGAAAGCAGAATTGCGAGACCACGCTAGTGGTAGCAACCACAAAGCAACAGCAGCAACAACAACCACAGCAACTACCTAGAAGTAGGCACTGGAAGGGAAAGCAAGCAAAGAAACACGAAGCTCGCTTTCTAATAAAAGAGGATGCCATTGTCGAGTCTGGTCCCAAAGATCCTCGAACTACTGTCATGATCAAAAACATTCCCAACAAGTACAGGTCCGTTTCTCTTTTTTATACTTTTATTACACACCATTGCTTGGTTTTCTTCTGTTTCTCTTCCTGTTCCTGTTATCTTATGTTACCTGCTAGGACCAGCTCAAACCATGAGAGATCACCAATTGAGCTTCTTCTTTCTAGTCATGTAAACAGTGTATATATAAAAGCATATCAAGAGAGAGAGAGAGAGATGTACTGCAAAGTATAA 1404 0.5278 MGETGIIVRLEGSLDPRAEEFRPTISNPLVQCHWYPVPLPLPLPLPLPFPHPLPPPPPPHLSTSSTRSLLLTPLPFTSDSALRAELQAFGDVRALQTEALRHGILIVHFYDLRHAESAFAAIRSMHHHFPQFAPAAPGLLSARPVSAHYVLPSSSSTPDAHNQGTLVVFNLDPHLTTDHLRRLFHPFGPIKELRDTPWKKNQRFVEFFDTRDAAKALKHMNGKQIHGKPIIIEFSRPGGHTRKFFHHSASSKATPLDFNAPPRRFDAPRLHSSHPQLPRKKSLESPVKVEESVDEAIGSMSLTGDVGNGVEEQQHSHGGGPPRRNLSRKQNCETTLVVATTKQQQQQQPQQLPRSRHWKGKQAKKHEARFLIKEDAIVESGPKDPRTTVMIKNIPNKYRSVSLFYTFITHHCLVFFCFSSCSCYLMLPARTSSNHERSPIELLLSSHVNSVYIKAYQEREREMYCKV* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03813 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 237 IPR000504 GO:0003723
Phac1g03813 467 SMART rrm1_1 165 233 IPR000504 GO:0003723
Phac1g03813 467 SUPERFAMILY RNA-binding domain, RBD 148 243 IPR035979 GO:0003676
Phac1g03813 467 MobiDBLite consensus disorder prediction 247 328 - -
Phac1g03813 467 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 230 IPR000504 GO:0003723
Phac1g03813 467 Gene3D - 157 244 IPR012677 -
Phac1g03813 467 FunFam Protein MEI2-like 1 163 256 - -
Phac1g03813 467 MobiDBLite consensus disorder prediction 340 360 - -
Phac1g03813 467 PANTHER RNA RECOGNITION MOTIF-CONTAINING 77 363 - -
Phac1g03813 467 MobiDBLite consensus disorder prediction 340 355 - -
Phac1g03813 467 MobiDBLite consensus disorder prediction 277 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03813 Phac-Chr1 42774916 42778161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03813 153 236 Eukaryotic Initiation Factors Gene Family AT2G23350 35.227 3.29e-08 54.3