Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03812 ATGGTTGCATTACTTTCTCTTGCTGTTAGTTATGATGGCATTCTACAGCATAAGTATAGCTTTTTATATTCCAAATCTTTCATTTGCTTAAAAATATCTGACAAAGTTCTGTCATCATTCTTTCAGTACGCTCTAAGGCTGCTTGGTGTTGCAATTGGGGTTGCTTTATCCTCCTTTATAGAAGGGGTGTGTTGGACAAGAACTGCAGAGAGACAAACTTCCCGCATGAGAATTGAGTATCTTAAATCAGTCCTAAGGCAAGAGGTTGGTTTCTTCGACAAGCAAACTGACTCTTCCAACACTTTCCAAGTTATTGCCACCATAACTTCTGATGCTCAAACAATCCAAGATACCATAGCTGATAAGGTGCCCAATTGTCTTGGTCACCTCTCAGCCTTTTTCTCTAGCTTCATAGTGGCACTCTTCCTTTCATGGAGGCTTGCAGTGGCTGCTTTTCCATTTTCAATCATGATGATCATGCCGGCAATCATATTTGGGAAGGCCATGAAAGAGCTGGGAAATAAAATGAAGGATGCATATGGAGTTGCTGGCAGCATAGCTGAACAAGCAATCTCATCAATACGCACTGTTTATTCATATGTGGGTGAGAAGCAAACAATAAAAGCTTTCAACTTGGGTCTTGAAAAAAGTATGGAGATTGGCATAAAACAAGGTCAAATCAAGGGAGTGATAATCGGTAGCATTGGGTTGCTATATGCTACTTGGGCATTCCAATCCTGGGTTGGTAGTGTTCTTGTCAGGACAAAAGGAGAAAGTGGTGGCCCTGTCTTTTGTGCTGAAATATGCATCATTTGGGGAGGACTGTCTCTGATGAGTGCACTCCCAAATCTTGGTTTCATATTAGAGGCAACAATAGCTACTACCCGGATTTTTGAGATGATTGATCGAGTGCCTAGCATAAATTCTTATAGAGAAAAAGGAAAGGTCTTAACTCATGCAAGAGGAGAAATCACATTTCAAGATGTTGAGTTTAGTTACCCATCAAGGCCAGATGCACTGATTCTCCAAGGACTCAATCTGAAAGTGCAGGCTGGTAAAACACTGGGTCTAGTTGGAGGGAGTGGTTCTGGCAAATCTACTATAATCTCTTTGCTTGAAAGATTTTATGATCCTGTTTATGGTGAGATATTGCTTGATGGATATGATATACAGACACTGCACCCTAAGTGGTTAAGGTCCCAGATGGGACTGGTAAATCAGGAGCCAATTCTCTTTGCAACATCCATAAGGGAGAACATTCTATTTGGCAAGGAAGGAGCTTCAATGGATGGAGTTATAAGCGCAGCAAAGGCAGCAAATGCACATGATTTCATTGTCAAACTTCCTAATGGATATGAAACTCAAGTGGGACAATTCGGTGCTCAGTTGTCTGGAGGGCAAAAGCAGAGGATTGCCATTGCAAGGGCTTTAATAAGAGAACCCAAAATCCTACTACTTGATGAAGCCACAAGTGCTCTGGATTCACAGTCCGAAAGACTAGTTCAGGAGGCCCTTGATAAGGCTTCTAGAGGCAGGACAACAATCATCATAGCACATCGCCTTTCAACAATTCGCAAGGCTGATTCAATAGTAGTTCTTCAATCAGGAAGAGTCCTTGAATGTGGTTCCCATGATGAGTTACTCCAACTAAACAATGGACAAGGAGGGGCTTACAGAAAAATGCTACAGCTTCAACAAGCAACAAGTCAAAACGAAATTGCATTGCATCCAATAAACAAGAGTCCCTTAGCAGTGGAAAATCTTACAAGCCAAAATTCGAGATGGCAAAGTAGCCCAACTCATCATGCATTTAGCTCAACACAGCCATTTAGTCCCATATATTCAATCAGTGTTGTAGAGTCTAGCTTTGATAATTACAGCATGAAAAACTTTGAAAAATCTTCTCATGCGAACTTCTCTCAATGGCGTTTACTAAGAATGAATTCCCCTGAGTGGAGACATGCTTTGCTTGGGTGTTTAGGGGCCATTGGCTCTGGAATATGTCAACCAATTTACTCCTATTGCTTGGGAATAGTTGCATCTGTCTACTTCATAAAAGATGACTCTCGCATCAAATCAGAAATCAGGTTGTACTCCTCCATCTTCTGCTGCATAGCTGTTGTCTACTTCATTTCAGGCCTCCTTCAGCATTACAATTTTACCATTATGGGGGAGAGTTTGCTCAAAAGGGTGAGAGAAAATTTGCTAGAGAAGGTGTTGACTTTTGAGATGGGATGGTTTGACCAAGAGGAGAATGGCAGTGCAGCAATTTGTGCTCGTTTGGCAACTGAAGCCAACTTGGTTAGATCCCTTGTTGCAGAACGAATGTCATTGTTAGTTAATGTTTCTGTTATGGCTTTCTTGGCTTTTGTGCTTAGTTTAATTGTCACATGGAGGGTGGCTCTTGTCATGATTGCAATGCAGCCTTTGATCATTGCATGTTTCTACTCAAAAAACATTCTCATGAAAAATATGGCAGGAAAAGCTAGAAGGGCTCAGAGAGAAGGTAGTCAATTGGCAATGGAAGCTACTGTTAACCACAGGACTATTGCTGCATTTTCATCTGAGAAAAGGATTTTGAACTTGTTCAGAACTTCTATGGAAGGCCCTAAGAAGGAAAGCATCAAGCAATCATGGATTTCAGGTTCCATTTTGTCAGTCTCATATTTTGTGACAACAGCATCTATAACTTTGACTTTTTGGTATGGAGGCAGGTTATTGAATCAAGGGCTGGTGGAATCCAAACATCTTTTGCAAGTTTTCCTCATTTTGATGGGCACTGGTAGACAAATTGCAGAGACAGCAAGTGCAACTTCTGACATAGCTAAAAGTGGAAGAGCCATTAGTTCAGTATTTGCAATACTTGATAGGAAAAGTGAGATTGAACCAGAAGATCCTAGGCATAGAAAGTGTAAAAATACATTGAAGGGCCATATAAAACTTAGAGATGTTTTTTTCTCATACCCAACAAGGCCAGACCAAATGATTCTCAAGGGCCTCAATCTTGATATTGAAGCTGGCAAAACAGTTGCATTAGTGGGACAAAGTGGCTCGGGTAAATCCACCATCATTGGCTTAATCGAAAGATTTTATGACCCCATGAAGGGATCCATATCCATAGACAATTGTGACATAAGGGAATTTAACTTGAGAAGTTTGAGAACACATATTGCCTTGGTTAGTCAGGAGCCAACTCTCTTTGCAGGAACTATACGTGACAACATTGTGTATGGGAAAAAGGATGCATCAGAAGATGAAATAAGAAAGGCCACACGTCTTTCAAATGCTCATGAGTTTATAAGTTCAATGAAAGATGGATATGATACTTACTGTGGAGAAAGAGGAGTGCAGCTATCAGGAGGGCAGAAGCAGAGGATAGCAATTGCTCGAGCAGTACTAAAGAATCCTTCAATCCTTCTGTTAGACGAGGCAACAAGTGCTCTAGACGGTCTGTCAGAAAATCTGGTGCAGGAGGCATTGGAGAAAATGATGGTTGGAAGAACGTGTGTGGTTATAGCTCACCGTTTGTCAACAATACAAAGTGCTGACTCCATAGTTGTGATTAAAAATGGGAAGGTGGTGGAACAAGGGTCGCACTCAGAGCTATTGAGAATTGGATCAAATGGGGCCTATTACTCCTTGACTAGGCTACAACAAGACCTCTCAACATGA 3672 0.412 MVALLSLAVSYDGILQHKYSFLYSKSFICLKISDKVLSSFFQYALRLLGVAIGVALSSFIEGVCWTRTAERQTSRMRIEYLKSVLRQEVGFFDKQTDSSNTFQVIATITSDAQTIQDTIADKVPNCLGHLSAFFSSFIVALFLSWRLAVAAFPFSIMMIMPAIIFGKAMKELGNKMKDAYGVAGSIAEQAISSIRTVYSYVGEKQTIKAFNLGLEKSMEIGIKQGQIKGVIIGSIGLLYATWAFQSWVGSVLVRTKGESGGPVFCAEICIIWGGLSLMSALPNLGFILEATIATTRIFEMIDRVPSINSYREKGKVLTHARGEITFQDVEFSYPSRPDALILQGLNLKVQAGKTLGLVGGSGSGKSTIISLLERFYDPVYGEILLDGYDIQTLHPKWLRSQMGLVNQEPILFATSIRENILFGKEGASMDGVISAAKAANAHDFIVKLPNGYETQVGQFGAQLSGGQKQRIAIARALIREPKILLLDEATSALDSQSERLVQEALDKASRGRTTIIIAHRLSTIRKADSIVVLQSGRVLECGSHDELLQLNNGQGGAYRKMLQLQQATSQNEIALHPINKSPLAVENLTSQNSRWQSSPTHHAFSSTQPFSPIYSISVVESSFDNYSMKNFEKSSHANFSQWRLLRMNSPEWRHALLGCLGAIGSGICQPIYSYCLGIVASVYFIKDDSRIKSEIRLYSSIFCCIAVVYFISGLLQHYNFTIMGESLLKRVRENLLEKVLTFEMGWFDQEENGSAAICARLATEANLVRSLVAERMSLLVNVSVMAFLAFVLSLIVTWRVALVMIAMQPLIIACFYSKNILMKNMAGKARRAQREGSQLAMEATVNHRTIAAFSSEKRILNLFRTSMEGPKKESIKQSWISGSILSVSYFVTTASITLTFWYGGRLLNQGLVESKHLLQVFLILMGTGRQIAETASATSDIAKSGRAISSVFAILDRKSEIEPEDPRHRKCKNTLKGHIKLRDVFFSYPTRPDQMILKGLNLDIEAGKTVALVGQSGSGKSTIIGLIERFYDPMKGSISIDNCDIREFNLRSLRTHIALVSQEPTLFAGTIRDNIVYGKKDASEDEIRKATRLSNAHEFISSMKDGYDTYCGERGVQLSGGQKQRIAIARAVLKNPSILLLDEATSALDGLSENLVQEALEKMMVGRTCVVIAHRLSTIQSADSIVVIKNGKVVEQGSHSELLRIGSNGAYYSLTRLQQDLST* 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03812 1223 ProSitePatterns ABC transporters family signature. 463 477 IPR017871 GO:0005524|GO:0016887
Phac1g03812 1223 ProSitePatterns ABC transporters family signature. 1118 1132 IPR017871 GO:0005524|GO:0016887
Phac1g03812 1223 Gene3D - 965 1222 IPR027417 -
Phac1g03812 1223 SUPERFAMILY ABC transporter transmembrane region 643 963 IPR036640 GO:0005524|GO:0016020
Phac1g03812 1223 PANTHER ABC TRANSPORTER B FAMILY 41 669 IPR039421 -
Phac1g03812 1223 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 264 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac1g03812 1223 FunFam ABC transporter B family member 4 314 572 - -
Phac1g03812 1223 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 324 560 IPR003439 GO:0005524
Phac1g03812 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 565 IPR027417 -
Phac1g03812 1223 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 979 1215 IPR003439 GO:0005524
Phac1g03812 1223 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 656 943 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac1g03812 1223 SMART AAA_5 1006 1192 IPR003593 GO:0016887
Phac1g03812 1223 SMART AAA_5 351 537 IPR003593 GO:0016887
Phac1g03812 1223 CDD ABC_6TM_Pgp_ABCB1_D2_like 645 961 - -
Phac1g03812 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 972 1218 IPR027417 -
Phac1g03812 1223 CDD ABC_6TM_Pgp_ABCB1_D1_like 33 297 - -
Phac1g03812 1223 Gene3D ABC transporter type 1, transmembrane domain 35 607 IPR036640 GO:0005524|GO:0016020
Phac1g03812 1223 Pfam ABC transporter 342 491 IPR003439 GO:0005524
Phac1g03812 1223 Pfam ABC transporter transmembrane region 40 255 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac1g03812 1223 Pfam ABC transporter transmembrane region 657 923 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Phac1g03812 1223 Gene3D ABC transporter type 1, transmembrane domain 634 957 IPR036640 GO:0005524|GO:0016020
Phac1g03812 1223 CDD ABC_MTABC3_MDL1_MDL2 324 565 - -
Phac1g03812 1223 Gene3D - 314 566 IPR027417 -
Phac1g03812 1223 SUPERFAMILY ABC transporter transmembrane region 35 305 IPR036640 GO:0005524|GO:0016020
Phac1g03812 1223 Coils Coil 1141 1161 - -
Phac1g03812 1223 Pfam ABC transporter 997 1146 IPR003439 GO:0005524
Phac1g03812 1223 FunFam ABC transporter B family member 4 969 1222 - -
Phac1g03812 1223 CDD ABC_MTABC3_MDL1_MDL2 979 1218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03812 Phac-Chr1 42764125 42769435 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03812 42 575 Calmodulin-binding Proteins AT2G36910 37.291 2.50e-100 346