Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03792 ATGGGTCTGTCGAATTTCCCGAGTGCGTCCGAAGGGGTGCTTCCAGTGCTTGTGATAAACACGGTTCTCTCAGTGGGCGTGTTGAAGAACATGTTCAGATCCATGCTGCAAGTTGTTGGTGGCAGTGAAAATGGAAGTTCTAGAAGGAACAGTGAACACGAGTGTCGTGAAAGTTCAGGAGAAAGGAGGGTGTCGATAACAGAGTACAGGGCATTGTGGAAGAAGACAATGGTGGAGTGCTGCGTTTGTTTGTGTCGTTTTGAAGGCAATCAAGAGGTTAGCGAGTTGCCTTGCAAACACTACTTCCACAGAGGTTGTTTGGAAAAATGGTTTGATAACAAACACGTCACATGCCCCTTGTGTCGTTCCATGGATTAG 378 0.4709 MGLSNFPSASEGVLPVLVINTVLSVGVLKNMFRSMLQVVGGSENGSSRRNSEHECRESSGERRVSITEYRALWKKTMVECCVCLCRFEGNQEVSELPCKHYFHRGCLEKWFDNKHVTCPLCRSMD* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03792 125 Pfam Ring finger domain 79 122 IPR001841 -
Phac1g03792 125 SUPERFAMILY RING/U-box 79 123 - -
Phac1g03792 125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 125 IPR013083 -
Phac1g03792 125 PANTHER - 1 124 IPR044249 -
Phac1g03792 125 SMART ring_2 80 121 IPR001841 -
Phac1g03792 125 ProSiteProfiles Zinc finger RING-type profile. 80 122 IPR001841 -
Phac1g03792 125 SMART ringv_2 79 122 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03792 Phac-Chr1 42694045 42694799 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03792 1 123 C3H Transcription Factor Family AT2G04240 36.301 1.74e-23 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03792 K16285 - gmx:100811790 191.43