Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac1g03779 | ATGAGGAGCAGAACCAGTTATAGTCCTATAGCTTCTCCTCTGCCCTCACCAGTTTCATTATGGTTTTCACAACACCTCCTTGAAGGAGATCACAACCACCTACACCTTCAACCTACCATTTTTATTGTCCTAAGTGGCTTAACTTGTGTAATTTTGTTTATCATCACCTTGTCCAAAATCCTAAGGTACTATTACTTCAATAGATACAACATTAGCAGAAGAAACCCTCCAATACTATTTGACATTCGAGGAGATTCTCCCTTTTTTGATGATGAGGAACATGAACAAGTTATGAGGCAGCACCCCATATGGTTCAGCCCCACAGAGGGTCTCCAACAATCAACCATAGACTCCATCACAGTTTACAGATACAGAAATGATGAAGTGTTGGTTAAAGAAACTGAGTGTCTTGTTTGCTTAGGTGAGTTTCAACAAGAAGAGAGTCTGAGACTGTTGCCAAAGTGTAGCCATGCTTTCCATGTCCCTTGCATTGATACCTGGTTGAGGTCACATAAAACTTGTCCCTTGTGCCGTGCCCCTATTGTTCATGACACTGTCAGTGTTGATGGTGGAACTGAGTCTGATTCAAGTGTTTCTGATATGATTGAGGACATGGAAGAATGTAATAGTGGTGTAGTGAGGGTTGGTGATGAAGATTCTAGTGAAGAGGGGAGAGGTGATGGAATTGAAGTTTTGTCTGAATGTGGTGAGAGGTGTTTCTCAGTGGATTCATCTTCTGCTATGTGTCAGATATACAAAGCTTAG | 765 | 0.4157 | MRSRTSYSPIASPLPSPVSLWFSQHLLEGDHNHLHLQPTIFIVLSGLTCVILFIITLSKILRYYYFNRYNISRRNPPILFDIRGDSPFFDDEEHEQVMRQHPIWFSPTEGLQQSTIDSITVYRYRNDEVLVKETECLVCLGEFQQEESLRLLPKCSHAFHVPCIDTWLRSHKTCPLCRAPIVHDTVSVDGGTESDSSVSDMIEDMEECNSGVVRVGDEDSSEEGRGDGIEVLSECGERCFSVDSSSAMCQIYKA* | 255 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac1g03779 | 254 | FunFam | E3 ubiquitin-protein ligase ATL6 | 102 | 184 | - | - | |
| Phac1g03779 | 254 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 186 | IPR013083 | - | |
| Phac1g03779 | 254 | ProSiteProfiles | Zinc finger RING-type profile. | 136 | 178 | IPR001841 | - | |
| Phac1g03779 | 254 | SMART | ring_2 | 136 | 177 | IPR001841 | - | |
| Phac1g03779 | 254 | CDD | RING-H2_EL5-like | 135 | 178 | - | - | |
| Phac1g03779 | 254 | SUPERFAMILY | RING/U-box | 123 | 184 | - | - | |
| Phac1g03779 | 254 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 36 | 184 | IPR044675 | - | |
| Phac1g03779 | 254 | Pfam | Ring finger domain | 135 | 178 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phac1g03779 | Phac-Chr1 | 42647633 | 42648490 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phac1g03779 | 101 | 249 | C3H Transcription Factor Family | AT5G10380 | 43.558 | 5.04e-33 | 120 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phac1g03779 | - | - | pvu:PHAVU_001G254300g | 440.269 |