Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac1g03778 | ATGCACAAAATTTCCATGCTTGTGTGTCTTTTTTCCTCTTGCATTCATGTTCTAAATTTTTTCATGACTAGTTTCCATTCTAGAAAATTATTTTTCCCCTTCCTTTGTTCAAGTGATGGTTCTACCATGAGGAGCAGAACCAGTTATAGTCCTATAGCTTCTCCTCTGCCCTCACCAGTTTCATTATGGTTTTCACAACACCTCCTTGAAGGAGATCACAACCACCTACACCTTCAACCTACCATTTTTATTGTCCTAAGTGGCTTAACTTGTGTAATTTTGTTTATCATCACCTTGTCCAAAATCCTAAGGTACTATTACTTCAATAGATACAACATTAGCAGAAGAAACCCTCCAATACTATTTGACATTCGAGGAGATTCTCCCTTTTTTGATGATGAGGAACATGAACAAGTTATGAGGCAGCACCCCATATGGTTCAGCCCCACAGAGGGTCTCCAACAATCAACCATAGACTCCATCACAGTTTACAGATACAGAAATGATGAAGTGTTGGTTAAAGAAACTGAGTGTCTTGTTTGCTTAGGTGAGTTTCAACAAGAAGAGAGTCTGAGACTGTTGCCAAAGTGTAGCCATGCTTTCCATGTCCCTTGCATTGATACCTGGTTGAGGTCACATAAAACTTGTCCCTTGTGCCGTGCCCCTATTGTTCATGACACTGTCAGTGTTGATGGTGGAACTGAGTCTGATTCAAGTGTTTCTGATATGATTGAGGACATGGAAGAATGTAATAGTGGTGTAGTGAGGGTTGGTGATGAAGATTCTAGTGAAGAGGGGAGAGGTGATGGAATTGAAGTTTTGTCTGAATGTGGTGAGATATACAAAGCTTAG | 852 | 0.4026 | MHKISMLVCLFSSCIHVLNFFMTSFHSRKLFFPFLCSSDGSTMRSRTSYSPIASPLPSPVSLWFSQHLLEGDHNHLHLQPTIFIVLSGLTCVILFIITLSKILRYYYFNRYNISRRNPPILFDIRGDSPFFDDEEHEQVMRQHPIWFSPTEGLQQSTIDSITVYRYRNDEVLVKETECLVCLGEFQQEESLRLLPKCSHAFHVPCIDTWLRSHKTCPLCRAPIVHDTVSVDGGTESDSSVSDMIEDMEECNSGVVRVGDEDSSEEGRGDGIEVLSECGEIYKA* | 284 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac1g03778 | 283 | Pfam | Ring finger domain | 177 | 220 | IPR001841 | - | |
| Phac1g03778 | 283 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 76 | 226 | IPR044675 | - | |
| Phac1g03778 | 283 | CDD | RING-H2_EL5-like | 177 | 220 | - | - | |
| Phac1g03778 | 283 | SMART | ring_2 | 178 | 219 | IPR001841 | - | |
| Phac1g03778 | 283 | FunFam | E3 ubiquitin-protein ligase ATL6 | 145 | 226 | - | - | |
| Phac1g03778 | 283 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 228 | IPR013083 | - | |
| Phac1g03778 | 283 | SUPERFAMILY | RING/U-box | 165 | 226 | - | - | |
| Phac1g03778 | 283 | ProSiteProfiles | Zinc finger RING-type profile. | 178 | 220 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phac1g03778 | Phac-Chr1 | 42647496 | 42648826 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phac1g03778 | 132 | 230 | C3H Transcription Factor Family | AT1G72220 | 51.852 | 1.39e-32 | 122 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phac1g03778 | - | - | pvu:PHAVU_001G254300g | 481.1 |