Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03671 ATGATGCATATAAGAAGAAATTCACGGCAATCAAAGAATCCCTTCCATGCTTATCCCTTTGAGACATTGTTGTCTGGTTCATGGCAAGCTGTAGAGTTCATAAAAATTGAGGCAGGAACTACGAGTCTGCAATGCATAGATAATCACCAAAGGACCACGGAGAAGGGCCTTTTGTCAGACCTTAGAATAAGATCAAGGAAAGCCACTTTATCCGATTGCTCCAACTTTTTAAGACGTGGGATTGACATTTGTGTTCTCTCAGCCTCTCAGAGTGGTGATACTAATTCAGAAGGATTTTGTGCTGACAATGTGTGGCTTGATGCTAAAATAAAGTCTATACAGAGAAAACCCCATAATTCAGGGTGCTCATGTCTGTATTATGTAAACCTCTATGTTAATCAAGGTTCACTTGGTAGAGAGATAAGAACTCTCAGTAAGGAGGTTAAGGTAATTGGAATAAATGAAATTGCCATCCTCCAAAAGCTTGGACGTAATACTTGTGAAGACCAACACTATCGATGGGAATCATCTGAAGATTGCTCCAAAGTATTACATACTAAATTGATACTAGGAAAATTTTTATCTGACCTTTCATGGTTAGTTGTTACATCTGCTTTAAAGAAGGTTTCATTCTATGCAAGATCTGTGGAAAACAAAATTGTGTATCAAATTTTAGGTAGTGATGCCACCAGCTCTTCATTAAACATACATTCTCGTATGCGTGTTGTTAATTTTGAAGTGAACGATGGCACGATGAAGCCCATTGTTACTCAAGTTGATGTATCTGACACCAATACAAGTGGTCACACACATGATTCCCATTATGATGAAGTATCACCATCTTATGATGTTGAGGGCTTAAGACGATCCAAACGTATGAACATACAACCTGAACGTTACTTAGGTTGTGGTAATGTTTCTGAAACAAAGGTTGGCAATGTTCGAAGTTGGCCATACAAGATAAAAAAAAGGAAAGATGATGATGATGTGTGTTCTTGCCGGCAGATTTTAGTGTACAGTAGGAGGAATAGAAAAAAGGAATTAAAGTCTGGTGAGGCCAATCAAAATGAAAATCAAACTCAACTTGCTAGTGTTCCTCTTCTTGAAGAGAGAGATTCATTAGCCCTTGAGCATCATGCCCTCAATGAGAAGGGTACTAGTAGTAATGCAAATTACAGCAACCATAAGCATAAGAGGAAGAGATTTTTAGATCTCGAAGACGATGAAGGTTCTGATCCTGGATGGGAAGACTTAAATTCCAATTTAAAGTCCAACAGAAATTATAGAAGCTTAAATGCAACTGCCTACAAGGAAATAATTGATTCATACTTAAAGGATATTAATAGAACTCCTACAAAAGAAGAACCAACAGTAATGGACCTGTGGAAGGAAATAACCAAATCGGAGAAAAAGAAGGAAGCAGAAATACCTCAAAGAGAGGAAGAGGAACAAATCTCTGATATGGATATGCTGTGGAGAGAAATGGAAATGGCATTGACATCATCTCATATTGAAGAAGGTTCGATTGGTGCCAATTTTGCTGAGAATTCGGAAGAATCTAATCACACTTGTCAACATGACTACAGACTGTATGAAGAAATTGGAATTTATTGCTTCAAATGTGGCTTTGTGAAAACCGAGATAAAATATGTCACGCCACCCTTTATGAAAAAGTATTATCAAGTGAGGCAACAAGAGGAGAAGCAATGCAGTGGAAAAGAGGCTGATAAAGATGATGATTTCCATCAGTTATCAAGTCGTGATGAACTTATTTCTATGGAACATGACAACGTTTGGAAGTTGATCCCTGAATTTAGAGAAAAGATGCATGTCCACCAAAAGAAAGCTTTCGAATTTCTTTGGCAAAATATTGGTGGGTCTATGGAGCCAACACTAATGGATGCAGAATCCAAAAGAAGAGGGGGTTGTGTAATATCTCATTCTCCTGGATCTGGTAAAACTTTTCTCATCATTGCATTTCTCATTAGCTATTTAAAGCTATTCCCAGGGATGAAGCCTCTTGTCCTTGCTCCAACAACCACTCTTCACACTTGGCACAAAGAATTCATCAAATGGGATATTTCTATGCCAGTGTATCTGATTCATGGGCGTGGTGAACCTCAGAAAGATGATGTGCAAAATTCAACTGTTCTTCCTCATTTTCGAAATCCAAATAAAAATGTCAACCATATTTTGAATTGCTTGGACAAGATAAAAAAGTGGCAAACACACCCAGGTGTTCTGGTCATGAGTTATACCTCATTTTTAGCATTAATGAGAGAGGGTTCAGAGTTTACACCTAGAAAGTGTATGGCTAAAGCATTGAGGGAAAGATCCGGGATCCTGATACTTGATGAAGGTCACAATCCTAGAAGCACTAAATCAAGGTTGAGGAAAGTGTTGATGAAAGTACAAACAGATATAAGAATACTACTTTCTGGTACATTGTTTCAGAACAACTTCAGTGAATACTTTAACACACTTTGTTTGGCAAGACCAAAGTTTATTTACGAAGTGCTGAAAGAGTTAGACACGAATGACAGAAGAAAAGGCAAAACAACAGAGAAGTCACGTCATTTGCTAGAGTCTCAAGCTAGAAAATTGTTCTTAGACAACATTACCAAGAAGATTGACTCAAGTAATGGACATGAGAGGATGCAAGGTCTAAACATGTTGAGAGAAATCACAAATGGTTTCATAGATATTTACGAAAGCGCAAGTTTTAACAGTGTTCCTGGCTTGCAAATGTTTACGTTGCTAATAAATACAACTGATCTGCAGAGTGAAGTTTTGATGAAACTGCACAGGAGAATGGCTGAGTGCACAGGGTACCCTCTGGAGTTAGAGCTTTTGATAACCCTTGGATCAATACATCCATGGCTGGTTAAAACAGCCTCATATGCAAATAAGTTTATGGCTTTGGACCAACTGCAGCAGCTAGAGAAATGCAAGTTAGATTTGAAGGCAGGGTCAAAAGTAAAATTTGTTATGAGCCTTGTTCTCCATGTTATGGAGAGGGAGAAAGTACTTATATTCTGTCACAATCATGCACCTGTGAAGTTATTGGTAGAGTTATTTGAGATGGTGTTCAAATGGGAAAAGGGTAGAGAAATTTTGTTGCTTAATGGGGAACAAGACCTCTTTGAACGTGGAAAAGTGATAGATAAGTTTGAAGAACCTAGAGGAGCATCAAAGGTGCTCCTTGCTTCAATCAAAGCTTGTGGTGAAGGTATTAGTTTGACATCAGCTTCAAGAGTGATTTTTCTGGACTCAGAGTGGAATCCATCGAAGACAAAGCAAGCTATTGCAAGGGCCTTTCGTCCTGGTCAGCAAAAGATGGTTTATGCATATCAGCTCTTGGCAAGAGGCACATTAGAGGAAGATAAGTACAGAAGAACCACTTGGAAAGAGTGGGTTTCTAGCATGATTTTCAGTGAGGCGTTTCAGGAGAACACTTCACATTCACAAGCAAAGATGATTGAAGATGACATACTGAGGGAAATGGTTGAAGAGGACAAGTCCAAATCAATTCACATGATACTCAAGAATGAAAAGGCTTCCACAAACTGA 3570 0.3843 MMHIRRNSRQSKNPFHAYPFETLLSGSWQAVEFIKIEAGTTSLQCIDNHQRTTEKGLLSDLRIRSRKATLSDCSNFLRRGIDICVLSASQSGDTNSEGFCADNVWLDAKIKSIQRKPHNSGCSCLYYVNLYVNQGSLGREIRTLSKEVKVIGINEIAILQKLGRNTCEDQHYRWESSEDCSKVLHTKLILGKFLSDLSWLVVTSALKKVSFYARSVENKIVYQILGSDATSSSLNIHSRMRVVNFEVNDGTMKPIVTQVDVSDTNTSGHTHDSHYDEVSPSYDVEGLRRSKRMNIQPERYLGCGNVSETKVGNVRSWPYKIKKRKDDDDVCSCRQILVYSRRNRKKELKSGEANQNENQTQLASVPLLEERDSLALEHHALNEKGTSSNANYSNHKHKRKRFLDLEDDEGSDPGWEDLNSNLKSNRNYRSLNATAYKEIIDSYLKDINRTPTKEEPTVMDLWKEITKSEKKKEAEIPQREEEEQISDMDMLWREMEMALTSSHIEEGSIGANFAENSEESNHTCQHDYRLYEEIGIYCFKCGFVKTEIKYVTPPFMKKYYQVRQQEEKQCSGKEADKDDDFHQLSSRDELISMEHDNVWKLIPEFREKMHVHQKKAFEFLWQNIGGSMEPTLMDAESKRRGGCVISHSPGSGKTFLIIAFLISYLKLFPGMKPLVLAPTTTLHTWHKEFIKWDISMPVYLIHGRGEPQKDDVQNSTVLPHFRNPNKNVNHILNCLDKIKKWQTHPGVLVMSYTSFLALMREGSEFTPRKCMAKALRERSGILILDEGHNPRSTKSRLRKVLMKVQTDIRILLSGTLFQNNFSEYFNTLCLARPKFIYEVLKELDTNDRRKGKTTEKSRHLLESQARKLFLDNITKKIDSSNGHERMQGLNMLREITNGFIDIYESASFNSVPGLQMFTLLINTTDLQSEVLMKLHRRMAECTGYPLELELLITLGSIHPWLVKTASYANKFMALDQLQQLEKCKLDLKAGSKVKFVMSLVLHVMEREKVLIFCHNHAPVKLLVELFEMVFKWEKGREILLLNGEQDLFERGKVIDKFEEPRGASKVLLASIKACGEGISLTSASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYAYQLLARGTLEEDKYRRTTWKEWVSSMIFSEAFQENTSHSQAKMIEDDILREMVEEDKSKSIHMILKNEKASTN* 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03671 1189 MobiDBLite consensus disorder prediction 345 365 - -
Phac1g03671 1189 Pfam Helicase conserved C-terminal domain 992 1108 IPR001650 -
Phac1g03671 1189 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 595 837 IPR027417 -
Phac1g03671 1189 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 634 834 IPR014001 -
Phac1g03671 1189 SMART helicmild6 1024 1109 IPR001650 -
Phac1g03671 1189 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 995 1165 IPR001650 -
Phac1g03671 1189 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 54 1188 IPR044567 GO:0080188
Phac1g03671 1189 Gene3D - 579 877 IPR038718 -
Phac1g03671 1189 Pfam SNF2-related domain 632 877 IPR000330 GO:0005524|GO:0140658
Phac1g03671 1189 CDD SF2_C_SNF 984 1120 - -
Phac1g03671 1189 Gene3D - 918 1188 IPR027417 -
Phac1g03671 1189 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 780 1153 IPR027417 -
Phac1g03671 1189 SMART ultradead3 605 846 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03671 Phac-Chr1 41989633 41994686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03671 1035 1127 RAD5 or RAD16-like Gene Family AT5G05130 43.617 9.99e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac1g03671 SNF2_N 1.4e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03671 K10875 - gmx:100781856 1708.35