Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03666 ATGGATTCCGACTTCCCCAACAAAGCGTTGACGAGCACGCGTTTTTCCGACCTGAATCCGCCACTTTCCGACCCCGTTCTCCAAGCCCTATCACAATCTGGCTTCGACTTCTGCACGCCGGTCCAAGCCGCCACCATTCCTTTGCTCTGCAGCTTTAAGGACGTCGCCGTCGACGCCGCCACCGGTTCCGGAAAAACCCTAGCCTTTGTCGTTCCTCTCGTCGAGATTCTGCGCCGGTCCTGCTCTCATCCCAAGTCTCACCAGGTGCTAGGGATAATTATATCCCCTACAAGGGAGCTTTCAACCCAAATATATCATGTGGCACAACCATTCATTTCGACATTGGTGAATGTTAAGTCCATGCTCCTTGTTGGTGGAGCGGAAGTAAAAGCAGACATAAACAAAATAGAGGAGGAAGGAGCAAACATATTGATCGGCACGCCTGGGAGGTTACATGACATAATGAAGCGGATGGATGTCTTGGATTTTAAAAACCTCGAGATTTTGATTTTGGATGAGGCTGATAGACTCTTAGATATGGGATTCCAGAAGCAGATTACTTCTATTATATCTCAATTGCCTAAGCTTCGTAGAACTGGTCTATTTTCTGCTACTCAAACTGAGGCTATTGAAGAGCTTTCTAAGGCGGGACTGAGGAACCCTGTGAGGGTTGAAGTTCGAGCAGAAACTAAATCAGAAAATGATCCTTCGTCATCAAAACAGCCAGAGTCTTCAAAAACACCTTCAGGACTTCACATTGAGTACTTGGAATGCGAGGCAGATAAGAAGCCATCACAGCTAATAGATATTCTTATTAAAAACCGCTCAAGAAAAATTATAATATATTTCATGACTTGTGCTTGTGTTGATTATTGGGGAGCTGTCCTTCCTGGTCTTTCTCTTTTGAAAGGTTTCTCCTTGATTCCCCTACATGGAAAGATGAAGCAGTCTGCCAGGGAGAAAGCACTAGCAACATTTACATCCCTTTCAAATGGAATTCTGCTATGTACAGATGTTGCTGCACGTGGACTTGACATACCAGGTGTTGATTGTATAGTGCAGTATGATCCCCCTCAAGATCCAAATGTTTTTGTACATAGAGTTGGTCGAACTGCACGGCTGGGAAAACAGGGTCATGCTGTTGTCTTCTTATTGCCAAAGGAGGAATCTTATGTAGAATTCTTGCGTATAAGAAGAATTCCTCTCCAAGAGAGAATATGTTCTGATGGTGCATTCGATGTTGTTCCTGAGATTCGTTCTGCTGCCAAAAAAGATCGCGATATCATGGAGAAAGGAATTAAGGCTTTTGTCTCTTACATCCGTGCTTATAAAGAGCATCACTGCTCCTATATTTTAAGGTGGAAAGAACTTGAAATTGGCAAATTGGCCATGGGATATGGCTTATTACAACTTCCTTCAATGCCAGAGGTTAAACATCATTCACTTTCCACTGAAGGATTTGAACCAGTTGAAGATGTCAATTTCCAGGACATTAAGTACAGGGATAAATCACGGGAGAAACAAAGGAAGAAGAACCTGCAAGCAAAGAAAGAAGCCAAAGAGAAAGAGCCAAAACCTCAAAAACCGAAGAAAACTCCAGATGCTGCTGTCATGCGGAAGAAAACAGCTCGACAGAGACGTGCTCGGCAGACAATAGAAGACGAGGAGGAGTTGATGCAAGAATACCGATTGTTGAAGAAATTGAAGAAAGGGACCATAGACGAGAATGAATATGCCAAGTTGACAGGCACTGAGGAATTACTTTGA 1767 0.4369 MDSDFPNKALTSTRFSDLNPPLSDPVLQALSQSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSCSHPKSHQVLGIIISPTRELSTQIYHVAQPFISTLVNVKSMLLVGGAEVKADINKIEEEGANILIGTPGRLHDIMKRMDVLDFKNLEILILDEADRLLDMGFQKQITSIISQLPKLRRTGLFSATQTEAIEELSKAGLRNPVRVEVRAETKSENDPSSSKQPESSKTPSGLHIEYLECEADKKPSQLIDILIKNRSRKIIIYFMTCACVDYWGAVLPGLSLLKGFSLIPLHGKMKQSAREKALATFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRIPLQERICSDGAFDVVPEIRSAAKKDRDIMEKGIKAFVSYIRAYKEHHCSYILRWKELEIGKLAMGYGLLQLPSMPEVKHHSLSTEGFEPVEDVNFQDIKYRDKSREKQRKKNLQAKKEAKEKEPKPQKPKKTPDAAVMRKKTARQRRARQTIEDEEELMQEYRLLKKLKKGTIDENEYAKLTGTEELL* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03666 588 SMART helicmild6 290 375 IPR001650 -
Phac1g03666 588 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Phac1g03666 588 MobiDBLite consensus disorder prediction 498 555 - -
Phac1g03666 588 Coils Coil 503 523 - -
Phac1g03666 588 MobiDBLite consensus disorder prediction 227 249 - -
Phac1g03666 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Phac1g03666 588 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Phac1g03666 588 CDD DEADc_DDX55 26 224 - -
Phac1g03666 588 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Phac1g03666 588 Pfam DEAD/DEAH box helicase 39 212 IPR011545 GO:0003676|GO:0005524
Phac1g03666 588 FunFam RNA helicase 9 227 - -
Phac1g03666 588 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Phac1g03666 588 Gene3D - 255 489 IPR027417 -
Phac1g03666 588 Pfam Domain of unknown function (DUF4217) 416 474 IPR025313 -
Phac1g03666 588 CDD SF2_C_DEAD 254 384 - -
Phac1g03666 588 PANTHER RNA HELICASE 12 520 - -
Phac1g03666 588 Coils Coil 538 565 - -
Phac1g03666 588 Gene3D - 3 227 IPR027417 -
Phac1g03666 588 SMART ultradead3 34 254 IPR014001 -
Phac1g03666 588 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Phac1g03666 588 SMART DUF4217_3 413 476 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03666 Phac-Chr1 41956677 41961659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03666 13 384 Eukaryotic Initiation Factors Gene Family AT3G19760 29.223 1.38e-44 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03666 K14809 - gmx:100801482 1033.86