LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac1g03635	ATGGCGAATTCAGGAGCATCCCTTGTCCATAGTTTTGCTTCGATAGTGGAATATGCTATTAGAAGTATAGGAGGAGATTTGGGGGCATTTCCTTTGCGTGATTTTTCTTTCGCAGTGGAGAATGCGTGGAGTAGTATTGGAGGAGATTTGGGAGCAGTACCTGTTCGTGGTTTTGCTTCTATAGTGGAGAATATGATGAGAAGTATTGGAGGAGATTTGGGAGCATTACCCGTGCATGGTTTTGCTTCGGCAGTGGAGAATGCGATGAGAAGTATTAGAGGAGATTTGGGAGTATCACCCATGCAGGGTTTTGCTTCGAGAGTGGAGAATGCTATGAGTAGCATTGGTGGAGATTTGGGAACATCCCATTCCCCTGTGCATGGTTTTCAAGTATTCACCTTACTTGAGCTTGCAGCAGCCACCAACAATTTCTCAGTTGACAACAAGATTCGCGCTGGAAGCTCTAGTGTTGTGTACAGGGGAAAACTTGTTGATGGTAGTGAGGTTACAATAGAAAGAGTAGAAAAGTGGAGCAGTAGAACGGTGGAAGAAGCCTTCTGGTGGAGGAGAACGTCTAGTTTGAAGTTTTTGCCCGGTTTACGTCCCAAGAACTTGGTTGGGCTGGTTGGGTTGTGTGAGGAGAAAAATGAAAGGGTGTTGGTGTATGAGGGCATGAAGAATGGGTCATTGTACGATCATTTACATGAGAAGGGTAGCAGTGTGTTGAATTCGTGGAAAATGAGGATAAAAATTGCTTTGGATGCTTCCCGAGGAATAGAATATCTGCATAAGTATGGAGTTCCATCTCCTGTTCATGGAGATATCAACCCTTCCAACATTCTTCTTGATGCTACTTGGACGGCCAAGGTATCTAACATTGGGAAGGCAGCAGGAACGTTTGGATACATTGATCCGGAGTACTATGATCTAAATGTGTTGACAACAAAGAGTGATGTGTATGGATTTGGAGTTGTGCTGCTTGAACTTTTAACAGGAAAAGATGGAGGCACCATATTATATGTACCCTCTGCAGAGGCTAGTATTTTGGGTGGAGATTTTGTGAAAAATTTGGATAAAAGGGTTGGAGAACCCCATCTCAGTGAAGCCAAGGCACTGAAGTTAGTGGCCCATACTGCCATCAATTGTGTAAATGTGGAAGGAAAGGTTAGACCAACCAGTGCTGAGGTTGTGCTCAATTTGGAGAGGGCTTTTGCTTATCTCCGAATTGAGATGGCTAATAGCGCAGTTGATGCAAGGAGTTTCAGTTGGGCAGTGGACAGTGCCATAGCGAGTGAGAGTGCGTCAAATATGGGAGAATCTCGTGTCCACAGTTTTGCTTCGGTAGTGGACGCTGCCATAAGGAGTAGCACTGCTTCTGAAGCGGATTTGGAAACATTCCCAACACATTATTTTGCTTTTGCTTCTGCGGGGGACACAAGAACTGTTGCAGCACGATTATTCACCCTGGCTGAGCTTAAAGCAGCCACCAACAATTTCTCAATTCACAACAAGATTTTTTGTGCTGGAAGCATTAGTGTTGTGCACAGAGGCAAGCTCTTTGATGGCCGTCAGGTGGCTGTCAAAAGGGCTGAAACCAGTTCCAAGATGAAGGAGTTTCAAGAGGGATTTGGCTATTTATCGACCCTTTTGCTCCGTCTACACCATAAGCACTTGGTTGGCCTAGTAGGGTTCTGTAAAGATAAAGATAAAAGGTTGTTGGTGTATGAGTACACGAAGAATCGGGCGTTATATGATCATCTGCATGACAAAAACAACGTGGACAAGGAGAGCAGTGCGTTGAATTCTTGGAGAATGAGGATCAAGATTGCTTTGGATGCTTCCCGGGGAATAGAATATCTTCATAAACATGTAGTTCCATCTATTATTCACAGAGATATCAAGTCTTCCAACATTCTTCTTGATGCAACTTGGACAGCAAGAGTATCTGGTTTTGAATCGTCGTGTTTCATGAGTCCAGATGAGCATGTTTACTCCGATACACGTGTGTTGACAGCAAAGAGTGATGTGTACGGGCTTGGAGTTGTGCTGCTTGAACTTTTAACAGGAAAGAAGACAACGTTAAAGTTTGGGATAAATAGAGAGACAAGTATGGTGAAGATCGCAGGGCGTGTTATTTTGGGTTGGAAAATGGTGAAAATTTTGGATCCAAGGGTTGGAGCACCCCATTTTAATGAAGAAGCAGAGGCACTGGAAATAGTGGCCCATACAGCGGTTAGTTGTATAAATTCGAAAAGGAAAGATAGACCAACTATGACTGAGGTAGTGGCCAATTTGGAGACTGCTTTAGCTCTTTGCGATAGTAGGCCATCATAA	2334	0.4392	MANSGASLVHSFASIVEYAIRSIGGDLGAFPLRDFSFAVENAWSSIGGDLGAVPVRGFASIVENMMRSIGGDLGALPVHGFASAVENAMRSIRGDLGVSPMQGFASRVENAMSSIGGDLGTSHSPVHGFQVFTLLELAAATNNFSVDNKIRAGSSSVVYRGKLVDGSEVTIERVEKWSSRTVEEAFWWRRTSSLKFLPGLRPKNLVGLVGLCEEKNERVLVYEGMKNGSLYDHLHEKGSSVLNSWKMRIKIALDASRGIEYLHKYGVPSPVHGDINPSNILLDATWTAKVSNIGKAAGTFGYIDPEYYDLNVLTTKSDVYGFGVVLLELLTGKDGGTILYVPSAEASILGGDFVKNLDKRVGEPHLSEAKALKLVAHTAINCVNVEGKVRPTSAEVVLNLERAFAYLRIEMANSAVDARSFSWAVDSAIASESASNMGESRVHSFASVVDAAIRSSTASEADLETFPTHYFAFASAGDTRTVAARLFTLAELKAATNNFSIHNKIFCAGSISVVHRGKLFDGRQVAVKRAETSSKMKEFQEGFGYLSTLLLRLHHKHLVGLVGFCKDKDKRLLVYEYTKNRALYDHLHDKNNVDKESSALNSWRMRIKIALDASRGIEYLHKHVVPSIIHRDIKSSNILLDATWTARVSGFESSCFMSPDEHVYSDTRVLTAKSDVYGLGVVLLELLTGKKTTLKFGINRETSMVKIAGRVILGWKMVKILDPRVGAPHFNEEAEALEIVAHTAVSCINSKRKDRPTMTEVVANLETALALCDSRPS*	778

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac1g03635	777	SMART	serkin_6	499	769	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac1g03635	777	SMART	serkin_6	144	375	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac1g03635	777	Pfam	Protein tyrosine and serine/threonine kinase	146	397	IPR001245	GO:0004672\|GO:0006468
	Phac1g03635	777	ProSiteProfiles	Protein kinase domain profile.	500	769	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac1g03635	777	Gene3D	Phosphorylase Kinase; domain 1	119	223	-	-
	Phac1g03635	777	Gene3D	Phosphorylase Kinase; domain 1	473	577	-	-
	Phac1g03635	777	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	628	640	IPR008271	GO:0004672\|GO:0006468
	Phac1g03635	777	SUPERFAMILY	Protein kinase-like (PK-like)	482	765	IPR011009	-
	Phac1g03635	777	PANTHER	SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4	483	774	IPR044815	GO:0004674
	Phac1g03635	777	Pfam	Protein kinase domain	508	763	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac1g03635	777	Gene3D	Transferase(Phosphotransferase) domain 1	579	773	-	-
	Phac1g03635	777	Gene3D	Transferase(Phosphotransferase) domain 1	225	419	-	-
	Phac1g03635	777	ProSiteProfiles	Protein kinase domain profile.	144	407	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac1g03635	777	SUPERFAMILY	Protein kinase-like (PK-like)	119	405	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac1g03635	Phac-Chr1	41730245	41732903	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac1g03635	484	772	Receptor kinase-like Gene Family	AT3G55950	53.271	2.39e-87	291

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CR4L	Phac1g03635		Pkinase	9.2e-27	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac1g03635	-		-	pvu:PHAVU_001G243700g	774.237