Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03550 ATGGGGGACTTTGTTTCTTCGTACTCAGAGAGAAAATCTGGTTTTATGAAATGGTTTGGCAAGATTTTCAAAATTGGGTCCAATAGAGGAAGGGGTGGTGGTCGTCATCTACAGCAGCCTGAAGAGGAAAACATGGCTTGGCCAGCTCCAGCTAGATCAATGGATGACCGAGCTAGATCTCGGAAAGAGAAAGAAGAGTTGGACCATGCAATTGCACTTTCTTTAGGCGAAAATTTGAAGAGACCAACAGGGTATAAATGGCGAACAGGAGCAAGAATTGATGAAGATTATGCAAAGGCTCTTCAGGATCGCATGTTCTCATCTGCTCATCCTCCATATGCCCCTGTACCCGCTTATCCCCATGGATATGGTATGGCATCGCATAGCAGAATATGTGGAGGGTGCAACCAAGAGATCTATGGCGATTGTTTGGGAGTCGGTCATAGTTATTTTCATCCAGACTGCTTTCGGTGTCACTCTTGTCGTTACCCCATTACTGAGCGTGAGATACCAATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTATTGGAACCAAAAGTATTGCCCATCTCACGAATATGATAATACATCTCGGTGCTGTAGTTGTGAAAGATTAGAGTCTCGGAATGAAAGATACTGTAGATTAGAAGATGGAAGGATTTTATGCTTTGAGTGCATGGAATCTGCTATAATTGACACTGGTGAATGTCAGCCTCTTTATCATGCTATCAGAGACTATTACGAAGGAATGAATATGAGAATAGATCAGCAAATCCCAATGCTTCTTGTTGAGAGACAAGCACTTAATGATGCCATTGTTGGAGAGAAGAATGGATTCCATCACCTACCAGAAACTAGGGGCTTATGCCTTTCAGAAGAGCAAACTGTCACAAGCGTGCTAAGACGGCCAAGAATTGGTGGTCATAGATTAATAGGGATGAGATCTCAACCTCAAAAGCTGCTTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTGTATGGCCTTCCAAGGTTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGCTTGGTTACGCCTGAAAGGTTACCAAAACCTTAGTCCTGAAGTAGAGGAAGGTATTTGTCAGGTTCTCTCTTACATGTGGCTTGAGTCAGAGGTGATGTCATGTGCTAGAACCATGCCATCAACATCATCAGCTTCTTCTTCCTCCTCATCCTCCCACTCATCAAAGAAAGGTGCAAAATCTCACGTTGAACGTAAATTGGGTGAGTTTTTCATGAACCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTCAGAGCGGCTAATGGAGCTGTGAATAAATATGGTTTACGTTGCACTCTGGAACATATTCGTTTGACTGGTAATTTCCCAGTTTGA 1404 0.4323 MGDFVSSYSERKSGFMKWFGKIFKIGSNRGRGGGRHLQQPEEENMAWPAPARSMDDRARSRKEKEELDHAIALSLGENLKRPTGYKWRTGARIDEDYAKALQDRMFSSAHPPYAPVPAYPHGYGMASHSRICGGCNQEIYGDCLGVGHSYFHPDCFRCHSCRYPITEREIPINAAGLIEYRCHPYWNQKYCPSHEYDNTSRCCSCERLESRNERYCRLEDGRILCFECMESAIIDTGECQPLYHAIRDYYEGMNMRIDQQIPMLLVERQALNDAIVGEKNGFHHLPETRGLCLSEEQTVTSVLRRPRIGGHRLIGMRSQPQKLLRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYQNLSPEVEEGICQVLSYMWLESEVMSCARTMPSTSSASSSSSSSHSSKKGAKSHVERKLGEFFMNQIANDSSPAYGGGFRAANGAVNKYGLRCTLEHIRLTGNFPV* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03550 467 ProSitePatterns LIM zinc-binding domain signature. 132 165 IPR001781 -
Phac1g03550 467 PANTHER PROTEIN DA1-RELATED 2 18 169 IPR045218 -
Phac1g03550 467 ProSiteProfiles LIM domain profile. 130 201 IPR001781 -
Phac1g03550 467 Pfam Protein DA1 252 462 IPR022087 -
Phac1g03550 467 Gene3D Cysteine Rich Protein 123 200 - -
Phac1g03550 467 MobiDBLite consensus disorder prediction 392 409 - -
Phac1g03550 467 MobiDBLite consensus disorder prediction 29 65 - -
Phac1g03550 467 Pfam LIM domain 132 176 IPR001781 -
Phac1g03550 467 SMART lim_4 131 194 IPR001781 -
Phac1g03550 467 CDD LIM_DA1 132 183 - -
Phac1g03550 467 MobiDBLite consensus disorder prediction 392 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03550 Phac-Chr1 41192231 41199891 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phac1g03550 DA1-like 6.4e-100 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03550 - - gmx:100798829 836.639