Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac1g03453 | ATGAGTTTTGTTTTTCGAGGAACGAGAGCAGATCTTGAAAATGGGTTTCCAGGATTTATACCGGAGAGGCGAGCATTGCGTGTCCATGCAGCACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAGTTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAATTTTCTGCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCAACAATGTTGAGGATGTATGCAACATGTCAACAGCTTCAAGCACAGGGCCAAGCTCATGCAGCAGCAGCCAGTGGCATTCTTGGCCACACGGAACTGAGGTTGCATATGCCACCATCAATAGCACTTGCAAGTCGAGGGCGTCTGCAGGGTCTCAGACTTCAGCTTGCACTTCTTGACCGGGAGTTTGATGATCTTGATTATGAAACTTTGAGAGCTTTGGATTCAGATAATGTTTCTACTGCACCTTCCATGACCGAGGAAGAGATAAATGCTCTTCCAGTCCACAAATACAAGGTTGCCGGTCCCCAGAGTGGTGGTTCCTCAATGCAACAAGCATCATCTTCCACTTCTGTTGAGAAGAAGCAAGATAATTCAGGTGCTGTTGGGAGCATGAAAGCCTCTGACGATGAGCTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGTGAAGTACTGCGTAGCTTACCTTGCTTGCATCAGTTTCACGCTAGTTGCATCGATCCATGGCTGCGCCAACAAGGTACATGCCCTGTATGTAAATTTCGAGCTGGATCTGGGTGGAGTGACAATGGACATAATGATATCGCAGACATGGTTTGA | 822 | 0.4659 | MSFVFRGTRADLENGFPGFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQGQAHAAAASGILGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVAGPQSGGSSMQQASSSTSVEKKQDNSGAVGSMKASDDELTCSVCLEQVNVGEVLRSLPCLHQFHASCIDPWLRQQGTCPVCKFRAGSGWSDNGHNDIADMV* | 274 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac1g03453 | 273 | SUPERFAMILY | RING/U-box | 208 | 257 | - | - | |
| Phac1g03453 | 273 | ProSiteProfiles | Zinc finger RING-type profile. | 213 | 254 | IPR001841 | - | |
| Phac1g03453 | 273 | PANTHER | TARGET OF ERK KINASE MPK-1 | 1 | 260 | - | - | |
| Phac1g03453 | 273 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 186 | 259 | IPR013083 | - | |
| Phac1g03453 | 273 | SMART | ring_2 | 213 | 253 | IPR001841 | - | |
| Phac1g03453 | 273 | MobiDBLite | consensus disorder prediction | 176 | 202 | - | - | |
| Phac1g03453 | 273 | Pfam | Ring finger domain | 212 | 254 | IPR001841 | - | |
| Phac1g03453 | 273 | CDD | RING-H2_PA-TM-RING | 212 | 254 | - | - | |
| Phac1g03453 | 273 | MobiDBLite | consensus disorder prediction | 173 | 205 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phac1g03453 | Phac-Chr1 | 40883315 | 40888133 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phac1g03453 | 1 | 273 | C3H Transcription Factor Family | AT3G55530 | 77.899 | 2.50e-147 | 412 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phac1g03453 | K16283 | - | gmx:100777936 | 464.536 |