Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03442 ATGAAATACTTTGACTGTAGTCGCTCTGGACCCCGCTCAGCGTTTGACAGCAATGTAGTTTACCAATTTGAAATGATGGAATATATTTTGGACTTTGGATTTGATCGGTTGGGAGCAACAGGATCAGAGATTGATCATCCTGTCCTGATCACAGAATGTGTATGCAACCCAATTCAGTCTCGTAGTAAAATGGCAGAACTTCTTTTTGAGACATATGGAGTTCCGTCTATAGCCTTTGGTGTTGACGCAGCATTCAGCTATAAATATAATCAACAACATGGTGTTTGTGATAAAGATGGTCTTGCTTTGTGTCCTGGATTCAATACAACTCATGTGATTCCGTTTGTAGATGGGGAGCCAATATATAAAGGATGTTGCCGAACCAATGTTGGTGGGTTCCATGTGACTGACTATTTAAAGCAACTTCTTTCACTTAAATATCCTTATCATATGGCTAGATTTACATGGGAAAAGGTTGACGACCTGAAGATGGAGCATTGTTATATTGCACCTGATTATGCTTCTGAAGCTCGACTGTTTCAGAAAAAATCTAATGAGGCTAAAGAAAAAACCAGATGTTGGCAGCTCCCTTGGGTTCCACCCCCTACTGAGGAGCCTCCTTCTGAGGAAGAGATTGCTAGAAAGGCAGCTATAAGAGAGAGACAGGGTCAAAGATTACGAGAAATGGCTGAGGCAAAGAGGTCCTCTAGAATAAACGAATTCGAAAATGAATTGCATGGTTTGGAATTTCTTCTAAAACAGCTTGAACAAGTTGAAGACAATGATATTCCATCTTTCCTAGCAGAGACTGGTTATGTCTCTAGGCAGGAGATAGAATCTGCCCGCACTAAAGTTACTCAATCTTTACGTAAAGCAAAAGGTGAACCAAAGAGTGAACAAGCTGAAAGTGAGAAGGCTGACTCTGCCACTAATGAAAAGTATTCTCTTATAAACATCCCTGATGACATGCTCTCCCCTGAACAGCTAGCTGAAAAAAAGAAACAGTTGTCACTGAAATCCATGTCAGATGGACGACAGCGATTGAAGCAGAAGCGTTATCAAGAGGAATTGGAGCGAGAAAGGAAACAACAGTTAGAGGAGGAAAAACGCCTAGAGAACCCAGAGCTTTACTTGGAACAATTGCGTGCCAAGTACAAAGACCTCTCAGAGAAAGTTGAGCAGCGAAAACGGCTCAAGACAAATGGAGATCATTCTAATGGAAATAACTTGTCTGGTGGCATTGGTCGTGGGGAGAGACTCCATGCTGCTCAGAGGGAGAGAATGCGCCTCTTAACTACTGCTGCCTTCGATCGTGGTAAGGGCGAAGATACATTTGGTGCCAAAGATGAAGATTGGCAACTGTACAAATTGATGAGCAAAGATGATGATGGTGACGATGGAGCAGATGAGAATGACACTGAGCTAGCTCGCATCTCTTCCAAGCTACAGGAGTTGGATCCAACTTTTGTGCCCAAGTCAGAAACTGGTAGCTCTCAATCTGCTGAGGCGTCACGTGCCCGTCCTCTAACCAAAGAAGATTTTCAAATTGCTTTTGGTGTTGAAAGGTTCCGATGCCCTGAAATCTTGTTCAATCCAAACTGGATCGCAGTTGATCAAGCAGGGTTAGATGAGATGGCCGGGGTCTCCATAAGAAGGTTATCATGTAAGGATGAAGGCCTAGAAGAGAGACTCACTAACTCCATACTTGTGACTGGTGGAAGTTCTATTTTTCCCGGCATCATTGAACGCCTTGAAGCCGGAATTAGAATGATTCGACCATGTGGATCACCCATTAAAGTAGTTAGAGCATTGGATCCTGTTATGGATGCATGGCGTGGGGCTGCTGCATATGCAACAATCCCACTATTCCATACCCAAACCTTCAGTAGGATGGACTATTTTGAAAAGGGTGAAGACTGGCTCCGGAGTTATCAACTCAAATATTCATTGTAA 1953 0.4306 MKYFDCSRSGPRSAFDSNVVYQFEMMEYILDFGFDRLGATGSEIDHPVLITECVCNPIQSRSKMAELLFETYGVPSIAFGVDAAFSYKYNQQHGVCDKDGLALCPGFNTTHVIPFVDGEPIYKGCCRTNVGGFHVTDYLKQLLSLKYPYHMARFTWEKVDDLKMEHCYIAPDYASEARLFQKKSNEAKEKTRCWQLPWVPPPTEEPPSEEEIARKAAIRERQGQRLREMAEAKRSSRINEFENELHGLEFLLKQLEQVEDNDIPSFLAETGYVSRQEIESARTKVTQSLRKAKGEPKSEQAESEKADSATNEKYSLINIPDDMLSPEQLAEKKKQLSLKSMSDGRQRLKQKRYQEELERERKQQLEEEKRLENPELYLEQLRAKYKDLSEKVEQRKRLKTNGDHSNGNNLSGGIGRGERLHAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDDDGDDGADENDTELARISSKLQELDPTFVPKSETGSSQSAEASRARPLTKEDFQIAFGVERFRCPEILFNPNWIAVDQAGLDEMAGVSIRRLSCKDEGLEERLTNSILVTGGSSIFPGIIERLEAGIRMIRPCGSPIKVVRALDPVMDAWRGAAAYATIPLFHTQTFSRMDYFEKGEDWLRSYQLKYSL* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03442 650 FunFam ARP5 actin-related protein 5 homolog 540 609 - -
Phac1g03442 650 FunFam Actin-related protein 5 132 186 - -
Phac1g03442 650 MobiDBLite consensus disorder prediction 490 505 - -
Phac1g03442 650 FunFam Putative actin-related protein 5 610 638 - -
Phac1g03442 650 PANTHER ACTIN 16 638 IPR004000 -
Phac1g03442 650 Gene3D - 15 79 - -
Phac1g03442 650 Pfam Actin 15 292 IPR004000 -
Phac1g03442 650 Pfam Actin 515 642 IPR004000 -
Phac1g03442 650 Gene3D Actin; Chain A, domain 4 473 539 - -
Phac1g03442 650 MobiDBLite consensus disorder prediction 330 355 - -
Phac1g03442 650 Coils Coil 378 398 - -
Phac1g03442 650 Coils Coil 348 374 - -
Phac1g03442 650 Gene3D - 610 638 - -
Phac1g03442 650 Gene3D Actin; Chain A, domain 4 136 189 - -
Phac1g03442 650 MobiDBLite consensus disorder prediction 394 416 - -
Phac1g03442 650 SMART actin_3 1 646 IPR004000 -
Phac1g03442 650 SUPERFAMILY Actin-like ATPase domain 100 643 IPR043129 -
Phac1g03442 650 MobiDBLite consensus disorder prediction 278 311 - -
Phac1g03442 650 MobiDBLite consensus disorder prediction 486 506 - -
Phac1g03442 650 MobiDBLite consensus disorder prediction 284 309 - -
Phac1g03442 650 Coils Coil 238 258 - -
Phac1g03442 650 Gene3D - 540 609 - -
Phac1g03442 650 FunFam actin-related protein 5 81 135 - -
Phac1g03442 650 Gene3D - 81 135 - -
Phac1g03442 650 SUPERFAMILY Actin-like ATPase domain 7 88 IPR043129 -
Phac1g03442 650 CDD NBD_sugar-kinase_HSP70_actin 7 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03442 Phac-Chr1 40777365 40783286 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03442 516 637 Cytoskeleton Gene Families AT5G09810 35.246 2.20e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03442 K11672 - gmx:100808396 1138.25