Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03399 ATGGCAACTGGAGACTTCATTAATAAATCCCTATCACTTCCTCCATACCCTGAGATGATTTTGGAGGCGATTGAGGCACTGAATGAAGGGAATGGTTCCAATAAAACATCAATTTCCAAGTACATAGAATCTAGGTACGGTGTACTGCCTCCGGGCCACAAGGTACTGCTCAATGTGCACCTTGCAAAAATGAGGGACACTGGGCTGCTGGACTTTTGGAAGAATAACTACACTAAGCGTAACCCGAACGCGCCGCCGCGACGTGGCCGTGGCAGGCCGCCCAAGCCCAAGGAGTTTCTGCCTCCGGGCACTGTCTTGTCACCGCCCAGGCCCAGGGGCCGTCCCCCAAAAGGCCCAAGGGACACGCCAAGGCCGTCCAAAGCCTCGGCTGGAAGTGGCAGACCCAGAGGCCGGCCTAGGAAGATGGCCCGGCCCGCTGGAGGGTTTGGCGAAGCATCGCCTTCCCAGTTGAAGCCCAGCGGGAAGCCCAGGGGAAGGCCTCCGAAAGTGAAGCCCCAATTGATAGAAAATATTGCTTAG 540 0.5611 MATGDFINKSLSLPPYPEMILEAIEALNEGNGSNKTSISKYIESRYGVLPPGHKVLLNVHLAKMRDTGLLDFWKNNYTKRNPNAPPRRGRGRPPKPKEFLPPGTVLSPPRPRGRPPKGPRDTPRPSKASAGSGRPRGRPRKMARPAGGFGEASPSQLKPSGKPRGRPPKVKPQLIENIA* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03399 179 SMART h15plus2 10 76 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phac1g03399 179 PRINTS AT-hook-like domain signature 131 141 IPR017956 GO:0003677
Phac1g03399 179 PRINTS AT-hook-like domain signature 87 97 IPR017956 GO:0003677
Phac1g03399 179 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Phac1g03399 179 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 12 82 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phac1g03399 179 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Phac1g03399 179 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Phac1g03399 179 SMART AT_hook_2 161 173 IPR017956 GO:0003677
Phac1g03399 179 SMART AT_hook_2 133 145 IPR017956 GO:0003677
Phac1g03399 179 MobiDBLite consensus disorder prediction 96 113 - -
Phac1g03399 179 PANTHER HISTONE H1 12 172 - -
Phac1g03399 179 MobiDBLite consensus disorder prediction 75 179 - -
Phac1g03399 179 FunFam HMG-Y-related protein A 8 90 - -
Phac1g03399 179 Pfam linker histone H1 and H5 family 14 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phac1g03399 179 PRINTS High mobility group protein (HMGY) signature 107 119 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Phac1g03399 179 PRINTS High mobility group protein (HMGY) signature 135 146 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Phac1g03399 179 PRINTS High mobility group protein (HMGY) signature 150 169 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Phac1g03399 179 Gene3D - 9 84 IPR036388 -
Phac1g03399 179 SUPERFAMILY "Winged helix" DNA-binding domain 9 94 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03399 Phac-Chr1 40519921 40521478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03399 19 86 Single Myb Histone (SMH) Gene Family AT1G49950 42.647 3.79e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03399 - - gmx:100803968 232.261