Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03366 ATGGTGTTGTCTTGGACTAGAAGAAACGTTTTCCGTCGTGCCAAGAAGGAGAAGGGACAGATTCAAGGTGATGGTTGTGGTGGTGAGTTGGAGGTGGAGGTTGTCATCCCCAACCACTTTCGGTGTCCGGTGAGTTTGGAGTTGATGACGGACCCGGTCACTTTATCGACCGGCATCACCTACGACAGGGTCAGCATTGAGAAGTGGATTGAGGGAGGGAACAAGACCTGCCCCGTCACCAACCAGGTGCTCACAACCTTTGACACCATCCCCAACCATGTCATTCGTAGGATGATTCAGGATTGGTGTGTTGAAAACAGCTCTTATGGGTTTCAGAGGATCCCCACTCCTCGGATTCCTCTCTCCAGCTACGAGGTTTCTCAGACGTGTATGAGGATCTTGTCGGCTTCTCAGCGTGGGGATGATAAAAAGTGCCAGGAGTTGGTTGGGAAGATTAAGGATTGGGGGAGAGATGAGAGGAACAAGAGGTGCATAATTGGCAATCATTCTAGAACTGATGCTGGCAATAGTCCCGATGCAGTTCTTGCATATGCCTTTGATTGTTTCTCAAGTGGTGACTCTTTTGACAAGCATGTGGTTGTTTTGGAGGAGATTTTGGAGGTGCTCACATGGATGATCCCACTTGGGGAAGAGGGTGTGTCTAAATTGAGTTCAAAAGCTTCATTGAATTGCATGGTCTGGTTTCTGGAGGGGAAAGACCTTGCATCAAGGCAAAGTGCTGCTTTGTTGCTCAGGCAAGTGTGTGTTCAAGAATTGGCCAAAGTTGGAAAAATTGTTGAAGGTTTGGTTACTATGATCAGGGAGCCTATTGGGAGTGCTTCCACCAAGGCTTGCTTGACAACAATTTTTAACTTGGTGTCATCTGCTGAGAACAGAGGGGAAATTGCTCAAAAATTTGTGGAATTGGATTTGGTTTCACTTTTGCTAGAGGCTATTGTTGATGGAGAGAAAGGGGTGTGTGAGAAGGCACTTGGGGTGTTGGATTGCATTTGTGATATCCAGAAGGGGAAGGAGGTTGTTAAAAACAATGCTCTTACTTTGCCTCTTGTCGTTAAGAAGCTTTTGAGGGTGTCACCATTGGCTTCAAGTTTTGCTGTCTCTATTCTTAAGAAGAATTCTGACAAGAAGGAGGAAGAGGCTCTGATTGAGGCAGTTCAACTAGGGGCTTTTCAAAAGCTCTTGGTTTTGCTGCAGGTTGGTTGTGATGAGAGCACAAAGGAGAATGCTACAGAGTTGTTGAAACTGTTGAACGGTTATAGGAACAAAGCCAAGTGCACTGACTCATCATCGGATTTCAAGTATCTTAAGAAGTCATTCTGA 1341 0.4594 MVLSWTRRNVFRRAKKEKGQIQGDGCGGELEVEVVIPNHFRCPVSLELMTDPVTLSTGITYDRVSIEKWIEGGNKTCPVTNQVLTTFDTIPNHVIRRMIQDWCVENSSYGFQRIPTPRIPLSSYEVSQTCMRILSASQRGDDKKCQELVGKIKDWGRDERNKRCIIGNHSRTDAGNSPDAVLAYAFDCFSSGDSFDKHVVVLEEILEVLTWMIPLGEEGVSKLSSKASLNCMVWFLEGKDLASRQSAALLLRQVCVQELAKVGKIVEGLVTMIREPIGSASTKACLTTIFNLVSSAENRGEIAQKFVELDLVSLLLEAIVDGEKGVCEKALGVLDCICDIQKGKEVVKNNALTLPLVVKKLLRVSPLASSFAVSILKKNSDKKEEEALIEAVQLGAFQKLLVLLQVGCDESTKENATELLKLLNGYRNKAKCTDSSSDFKYLKKSF* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03366 446 SMART Ubox_2 39 102 IPR003613 GO:0004842|GO:0016567
Phac1g03366 446 SUPERFAMILY ARM repeat 196 423 IPR016024 -
Phac1g03366 446 Pfam U-box domain 36 107 IPR003613 GO:0004842|GO:0016567
Phac1g03366 446 Gene3D - 221 433 IPR011989 -
Phac1g03366 446 SUPERFAMILY RING/U-box 31 111 - -
Phac1g03366 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 109 IPR013083 -
Phac1g03366 446 ProSiteProfiles U-box domain profile. 35 109 IPR003613 GO:0004842|GO:0016567
Phac1g03366 446 PANTHER WDSAM1 PROTEIN 33 432 IPR045185 GO:0061630
Phac1g03366 446 CDD RING-Ubox_PUB 37 88 IPR045210 -
Phac1g03366 446 FunFam RING-type E3 ubiquitin transferase 36 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03366 Phac-Chr1 40326500 40328268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03366 28 446 U-box Gene Family AT5G37490 48.244 8.85e-125 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03366 - - var:108327887 795.808