Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03325 ATGCGATTCGTTTTAGTATTAGTACGGTGCCTCACTGATACTCTCTCGGTGACCCATTCCCATTCGGTTATTGCTTTGCTGCTTCTTTCATTCGTAAATTGGGTGATGATGGATCTGAAGGAATGGTCGTCTTCAGAGCTCAACGAAAACAAGAAATGCTGCGCTGATTGCAAAACCACCAAGACCCCACTCTGGAGAGGAGGACCAGCCGGACCCAAGACTCTGTGCAACGCCTGCGGAATCCGGTACCGGAAGAGAGGGAGTTGTTCGAGAAAGAGAGAGGAGGTGGTGGTGTTGCACCGGGCATCCTCTGTTGTTAAGAAACAGAGCTGGAAGATGTTGGGAGAAGAGGAACAGGCGGCGGTGTGTTTGATGGCCTTGTCCTGTGGTTTTTTACCATTCCTTCACTTGCCACATTCCAGGTAA 426 0.5 MRFVLVLVRCLTDTLSVTHSHSVIALLLLSFVNWVMMDLKEWSSSELNENKKCCADCKTTKTPLWRGGPAGPKTLCNACGIRYRKRGSCSRKREEVVVLHRASSVVKKQSWKMLGEEEQAAVCLMALSCGFLPFLHLPHSR* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03325 141 SMART GATA_3 48 99 IPR000679 GO:0006355|GO:0043565
Phac1g03325 141 Pfam GATA zinc finger 54 88 IPR000679 GO:0006355|GO:0043565
Phac1g03325 141 ProSitePatterns GATA-type zinc finger domain. 54 79 IPR000679 GO:0006355|GO:0043565
Phac1g03325 141 PANTHER OS01G0976800 PROTEIN 43 86 - -
Phac1g03325 141 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 51 88 - -
Phac1g03325 141 Gene3D - 48 113 IPR013088 GO:0006355|GO:0008270
Phac1g03325 141 ProSiteProfiles GATA-type zinc finger domain profile. 48 87 IPR000679 GO:0006355|GO:0043565
Phac1g03325 141 CDD ZnF_GATA 54 89 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03325 Phac-Chr1 40154334 40155304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03325 17 130 C2C2-Gata Transcription Factor Family AT5G49300 44.853 6.35e-28 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phac1g03325 GATA 8e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03325 - - pvu:PHAVU_001G226500g 220.705