Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03299 ATGGAAGCACTTTACAGGTTCAAACCTCTTCTCCCTTCTCTCCAGGATTCTCATATGCGTCTCGGAACACCTCAACCCAACGTAACCGACTCAGGTATGACGGATCGGATCATCAAGATCCAGATCGCCAATCACCCTCTTTATCCAGATTTACTCTCTGCATACATAGAATGCCAAAAGGTTGGAGCGCCGCCAGAACTGGCTTGCCTTCTTGAAGAAATAGGCCGAGAAAGCCGCCGCATGAATGCTCGCCTTGAGAAAGGGGACGGCCCTGAACTTGACCACTTCATGGAAATGTACTGCGATTTGCTTCGTAGATACAAGGAGGAGTTGTCCAGACCCTTCAATGAAGCAACTTTGTTTCTGGGAAACATGGAATCACAACTTAGCAACCTTTGTAATGGAACACTGGCAAAGTCTTCAGATAACAACCACTCCGATGAAGTAGCTGGTGGAGCATCAGAGGAAGAAAGAAGTTGTGGAGAGATAGAAGAAGTTGAAGGTGATCAAAATCTTAAAGAGATGCTCCTTCGCAAATACAGTGGCCATTTTAGCGGTTTGAGAAAGGAATTTCTAAAACGGAGAAAAAAGGGTAAGCTACCAAAGGATGCAAAGATGGCACTCATGGACTGGTGGAACACCCATCATCGATGGCCATATCCTACGGAGGAGGAGAAAGTGAAGTTATCAGAAGTGACTGGACTGGATCAAAAGCAGATAAATAATTGGTTCATCAATCAGAGAAAACGGCATTGGAAACCAACTGAGGACATGCGATTTGCCGTTATGGATGGGTTAAGTGGCGGCGGTGGCGTCATAGGAGGAGCTATGTTCTTTTAG 840 0.4583 MEALYRFKPLLPSLQDSHMRLGTPQPNVTDSGMTDRIIKIQIANHPLYPDLLSAYIECQKVGAPPELACLLEEIGRESRRMNARLEKGDGPELDHFMEMYCDLLRRYKEELSRPFNEATLFLGNMESQLSNLCNGTLAKSSDNNHSDEVAGGASEEERSCGEIEEVEGDQNLKEMLLRKYSGHFSGLRKEFLKRRKKGKLPKDAKMALMDWWNTHHRWPYPTEEEKVKLSEVTGLDQKQINNWFINQRKRHWKPTEDMRFAVMDGLSGGGGVIGGAMFF* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03299 279 Pfam KNOX1 domain 38 78 IPR005540 GO:0003677|GO:0005634
Phac1g03299 279 MobiDBLite consensus disorder prediction 138 159 - -
Phac1g03299 279 SMART HOX_1 193 258 IPR001356 GO:0003677
Phac1g03299 279 Pfam KNOX2 domain 88 133 IPR005541 GO:0003677|GO:0005634
Phac1g03299 279 CDD homeodomain 194 254 IPR001356 GO:0003677
Phac1g03299 279 Pfam ELK domain 172 192 IPR005539 GO:0003677
Phac1g03299 279 Gene3D - 189 262 - -
Phac1g03299 279 SMART KNOX1_2 36 80 IPR005540 GO:0003677|GO:0005634
Phac1g03299 279 SMART KNOX2_2 83 134 IPR005541 GO:0003677|GO:0005634
Phac1g03299 279 Pfam Homeobox KN domain 211 250 IPR008422 GO:0003677|GO:0006355
Phac1g03299 279 ProSiteProfiles ELK domain profile. 171 191 IPR005539 GO:0003677
Phac1g03299 279 SUPERFAMILY Homeodomain-like 193 266 IPR009057 -
Phac1g03299 279 ProSitePatterns 'Homeobox' domain signature. 229 252 IPR017970 GO:0000981|GO:0006355
Phac1g03299 279 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 49 261 - -
Phac1g03299 279 SMART ELK_2 171 192 IPR005539 GO:0003677
Phac1g03299 279 ProSiteProfiles 'Homeobox' domain profile. 191 254 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03299 Phac-Chr1 40045908 40051390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03299 23 269 Homeobox Transcription Factor Family AT1G23380 53.282 5.89e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Phac1g03299 KNOX2 2.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03299 - - pvu:PHAVU_001G224900g 513.842