Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03283 ATGTCTCTGCGACCTGGTTCTAGTTCTGGTTCTTCTTGGAAGGCGAGGAAAAAAAGTTATAAGACTGGGATTAACGCGGAAGACAGTAGGAGAAGGAGGGTTGAAGACCTCGTGGGCATCAGAAAAATCAAACGCCAAACCACTCTTCTCAACAAACGAGAAGAGACACACTCCTGCGAAACGGTGTCGGAAGCTATTCCTGAGATAGTGAAACGTTTATGTGATGAGTACCCTCATAAGCAATTGGAGGCAACTGCTCACTTAAGAACTATGTTAACATTTGGTGATCAGGCCCCTCCAGTTGATGAGGTCGTTAAGAATGGTATTCTCCCTCGCTTTGTGGAGTTATTGTCAAGAGACGATGCACCCCAATTGCAGATAGAAGTTCTGTGGATTTTATCTAATTTTGCTTCCGGAACATCCCAACACAAAAGTGCTGTCGTTGAACTTGGTGTTATTCCACTCTTGGTCAATCTTCTCTCTAGTACCGATGGGGATACCAGAGAAGAGGCAGTATGCCTTTTAGGGAACATTGTTGCTGATTCCCCAGACTATAGGGATCTTGCTCTTAACCATGGTGCTCTCAAGCCATTATTATGTCAGTTGCAACCACATTCAACATTGTATATGTTGAGAAATGCTACGTGGTGTTTATCTGTTTTGTTCCTTGGAATGCCTCCAGTAAACTTTGAACAGGTAAAGATTGCCTTACCTGCTCTTCAACAACTCATCCACGCGACCGATGAGGAAGTTTTAACCGATACATGCTGGGCTCTGGCTTACCTTTCGGAAGGTCAAATTGGCAAAAGTCAAGCTATTGTTGAACTTGGAGTTTGCCCAAAACTTGTGCAACTTCTTCAGCATCCATCACATTCAGTTATTATACCTGCGCTTCAGGCTTTAGGAAATATTGCTGCTGGTGATGAGGCTCAGGCACAGTTCTTGATTGATAACCAATTGCTTCCGTGTCTTCACCAATTTCTTACGCGTGAATACACAAAATCCATCTTTAAAGAAGCTTGTTGGACAATCGCAAATATCACAGCTGGGACTCGAGCTCAAATACAGGCTGTGTTTGATGCCAATATTATTCCTCCTCTTGTTCAAATTCTCCATACTGCTGAGTTTGAGGTCAAGAGGGAGGCTGTCTGCGCGATCTACAATGTCACTTCTAAAGGATCTTTTGACAATATCAGGTCCCTTGCGGCTGAGGGTTGCATTGAGGCACTATGTAAGCTCTTGACCTGTCCAGACCCAAAGATGGTGACACTTTGTCTGGAAGGGCTGGTGAACATTTTGGCAGTTGGAGAAGCTGACAAGGATGAGAATGGCAATATTTTTGCTAAAAGGGTTGAGGAATGTGGAGGATTGGAGAAGATTGAAACATTGCAGATCCATGACAACAGTGAGGTTCATACGAGAGCTTTGTGGATTTCTGATTGCTTTCGGGCAGAGAATGAGTTGGAAGATACGGATATGTGCGTGAGCCTGCTTGATTTTTCACTCGGAGTTAACCGACCTAACTCATCATCATCATCATCTTACATGCGTTGA 1554 0.4389 MSLRPGSSSGSSWKARKKSYKTGINAEDSRRRRVEDLVGIRKIKRQTTLLNKREETHSCETVSEAIPEIVKRLCDEYPHKQLEATAHLRTMLTFGDQAPPVDEVVKNGILPRFVELLSRDDAPQLQIEVLWILSNFASGTSQHKSAVVELGVIPLLVNLLSSTDGDTREEAVCLLGNIVADSPDYRDLALNHGALKPLLCQLQPHSTLYMLRNATWCLSVLFLGMPPVNFEQVKIALPALQQLIHATDEEVLTDTCWALAYLSEGQIGKSQAIVELGVCPKLVQLLQHPSHSVIIPALQALGNIAAGDEAQAQFLIDNQLLPCLHQFLTREYTKSIFKEACWTIANITAGTRAQIQAVFDANIIPPLVQILHTAEFEVKREAVCAIYNVTSKGSFDNIRSLAAEGCIEALCKLLTCPDPKMVTLCLEGLVNILAVGEADKDENGNIFAKRVEECGGLEKIETLQIHDNSEVHTRALWISDCFRAENELEDTDMCVSLLDFSLGVNRPNSSSSSSYMR* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03283 517 SMART arm_5 96 138 IPR000225 GO:0005515
Phac1g03283 517 SMART arm_5 308 349 IPR000225 GO:0005515
Phac1g03283 517 SMART arm_5 265 306 IPR000225 GO:0005515
Phac1g03283 517 SMART arm_5 226 264 IPR000225 GO:0005515
Phac1g03283 517 SMART arm_5 394 434 IPR000225 GO:0005515
Phac1g03283 517 SMART arm_5 182 223 IPR000225 GO:0005515
Phac1g03283 517 SMART arm_5 140 180 IPR000225 GO:0005515
Phac1g03283 517 SMART arm_5 351 391 IPR000225 GO:0005515
Phac1g03283 517 SUPERFAMILY ARM repeat 13 482 IPR016024 -
Phac1g03283 517 Pfam Importin beta binding domain 16 85 IPR002652 GO:0006606|GO:0061608
Phac1g03283 517 PANTHER IMPORTIN ALPHA 16 482 - -
Phac1g03283 517 Pfam Armadillo/beta-catenin-like repeat 99 137 IPR000225 GO:0005515
Phac1g03283 517 Pfam Armadillo/beta-catenin-like repeat 271 306 IPR000225 GO:0005515
Phac1g03283 517 Pfam Armadillo/beta-catenin-like repeat 182 221 IPR000225 GO:0005515
Phac1g03283 517 Pfam Armadillo/beta-catenin-like repeat 353 390 IPR000225 GO:0005515
Phac1g03283 517 Pfam Armadillo/beta-catenin-like repeat 141 179 IPR000225 GO:0005515
Phac1g03283 517 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 277 309 IPR000225 GO:0005515
Phac1g03283 517 PIRSF Importin_alpha 7 499 IPR024931 GO:0005737|GO:0006606|GO:0061608
Phac1g03283 517 Gene3D - 14 54 IPR036975 GO:0006606
Phac1g03283 517 Gene3D - 64 482 IPR011989 -
Phac1g03283 517 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 108 151 IPR000225 GO:0005515
Phac1g03283 517 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 151 193 IPR000225 GO:0005515
Phac1g03283 517 MobiDBLite consensus disorder prediction 1 26 - -
Phac1g03283 517 Pfam Atypical Arm repeat 445 478 IPR032413 -
Phac1g03283 517 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 362 390 IPR000225 GO:0005515
Phac1g03283 517 ProSiteProfiles IBB domain profile. 1 62 IPR002652 GO:0006606|GO:0061608
Phac1g03283 517 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03283 Phac-Chr1 39961457 39967424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03283 136 382 U-box Gene Family AT3G46510 24.701 5.64e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03283 K15042 - gmx:100793195 592.808