Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03221 ATGATAGTAGGAATCTGGCATATTCAGCATCAAACTAAACCATCTTTCCTTGTCTTGTCACAGAGAGAGAAGATGGAAAAGTTCATTATGAATGCTCTCATACTGATTGTGGTGCTATTCACTACAGAACTTGGAGTAGCATCAGCTGCATGGTTGCAAGCTCATGCAACTTTCTATGGTGGAAGGCACGCCTCAGGAACAATGGGAGGTGCATGTGGCTATGGAAATCTCTACATAGATGGTTATGGTATAAGAACAGCTGCTTTGAGCACTGTTTTGTTTAATGACGGAAAAGCGTGTGGTGGTTGCTATACTATATTTTGTGACGCAAAAAAAGCGCCCCAATGGTGCCTTAGAGGCACTTCCATCACTATCACTGCCACGAATTTCTGTCCCCCAAACTATGCTCTCCCTAATGACGATGGTGGTTGGTGTAATCCTCCTAGACCACACTTTGACATGTCTCAACCTGCATTTGAGACAATAGCAAAGTACAAAGCTGGGATTGTACCAATTTTTTACAGGAAAGTTATGTGCAAAAGAAATGGAGGCATCAGATTTACCATCAATGGGAAAAACTATTTTGAATTGGTGCTTATAAGCAACGTTGGTGGGGGTGGAGAGATTTCTAGAGTTTGGATCAAAGCGTCCAAAATGAAGCAGTGGGAAAGCATGACAAGAAATTGGGGTGCTAATTGGCAAAGCTTGAGATATCTGAATGGTCAGAGTTTGTCTTTCAAAGTTCAACTCCTCAATGGGGAGACTCGCACTGCATACAATGTAGCACCGTCCAATTGGAGATTTGGCCAGTCTTTCCGCACCAATGTTCAGTTCTGA 837 0.4277 MIVGIWHIQHQTKPSFLVLSQREKMEKFIMNALILIVVLFTTELGVASAAWLQAHATFYGGRHASGTMGGACGYGNLYIDGYGIRTAALSTVLFNDGKACGGCYTIFCDAKKAPQWCLRGTSITITATNFCPPNYALPNDDGGWCNPPRPHFDMSQPAFETIAKYKAGIVPIFYRKVMCKRNGGIRFTINGKNYFELVLISNVGGGGEISRVWIKASKMKQWESMTRNWGANWQSLRYLNGQSLSFKVQLLNGETRTAYNVAPSNWRFGQSFRTNVQF* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03221 278 Gene3D - 41 180 IPR036908 -
Phac1g03221 278 SUPERFAMILY PHL pollen allergen 181 273 IPR036749 -
Phac1g03221 278 Gene3D - 181 278 IPR036749 -
Phac1g03221 278 Pfam Expansin C-terminal domain 185 263 IPR007117 -
Phac1g03221 278 SMART dpbb_1 86 174 IPR007112 -
Phac1g03221 278 PRINTS Expansin signature 123 133 IPR002963 GO:0009664
Phac1g03221 278 PRINTS Expansin signature 142 159 IPR002963 GO:0009664
Phac1g03221 278 PRINTS Expansin signature 195 216 IPR002963 GO:0009664
Phac1g03221 278 PRINTS Expansin signature 260 276 IPR002963 GO:0009664
Phac1g03221 278 PRINTS Expansin signature 110 121 IPR002963 GO:0009664
Phac1g03221 278 PRINTS Expansin signature 81 95 IPR002963 GO:0009664
Phac1g03221 278 PRINTS Expansin signature 231 252 IPR002963 GO:0009664
Phac1g03221 278 PRINTS Expansin signature 159 172 IPR002963 GO:0009664
Phac1g03221 278 PRINTS Expansin signature 183 195 IPR002963 GO:0009664
Phac1g03221 278 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 194 274 IPR007117 -
Phac1g03221 278 FunFam Expansin 41 180 - -
Phac1g03221 278 Pfam Lytic transglycolase 86 174 IPR009009 -
Phac1g03221 278 PANTHER EXPANSIN-A15 32 274 IPR002963 GO:0009664
Phac1g03221 278 CDD DPBB_EXPA_N 51 179 - -
Phac1g03221 278 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 69 184 IPR007112 -
Phac1g03221 278 PRINTS Expansin/Lol pI family signature 260 274 IPR007118 GO:0005576
Phac1g03221 278 PRINTS Expansin/Lol pI family signature 50 65 IPR007118 GO:0005576
Phac1g03221 278 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576
Phac1g03221 278 PRINTS Expansin/Lol pI family signature 167 183 IPR007118 GO:0005576
Phac1g03221 278 PRINTS Expansin/Lol pI family signature 90 108 IPR007118 GO:0005576
Phac1g03221 278 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Phac1g03221 278 SUPERFAMILY Barwin-like endoglucanases 44 202 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03221 Phac-Chr1 39560761 39562356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03221 34 278 Expansin Gene Family AT4G01630 73.494 9.99e-142 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03221 - - gmx:100787396 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g03221 1 39560761 39562356 Phac1g03221 1 39560761 39562356 ECH
Phac1g03221 1 39560761 39562356 Phac7g03276 7 35198561 35201182 PCT