Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac1g03204 | ATGATTCAGGAGATGCTTCACTCCACTGGCTCGGCTATGACAAGAACCTCTTCCCATGTACCCTCCATTTATGACAATGATCTCCTTGAGCTGGTGTGGGAAAATGGTGAGGTTGTTGTACGAGGAGGTTCATCAGATAGATCAAGAAACACTAACGAGGAAAGAGTATACGAAGATGTCAGCATAAAAAGAACAAGGTTGAACCCTTTATACTCACTTGAAGATCACCTTCCCCCTCTAAAGGAATCTTACATGAGCTCTTCGTATCAAAGCAATGCCCAAGATTCGTGCCATTCCGCCCAAACCAAGAATTCCTGCAAGCTTAACGAAGAATTTGAAAACTTATTAAGACAAGCAAAAGACTCTAAGCCCGTTACCCCAAGCTATACTCTCTTACAGCAGTGCTCATCTTCATCTCCTCTCAAGAAACAAAGAACAGATTCAACCCAAACACTGCCACCACCAAACACACGGAACTTGGGGTTTGATCAAACAACAGCTAAAGTGAACTTCTCCAATTTTTCAATACCTGCGGTGTTTCTCAAATCTAGTACTTGTCAGGGAAACAGCACAACTCAGCAGGCAAAAAATCATTCATCTCCACCAAGAACGGAGGAGATTGAAGCGCCCAAGGTTGAGAAATCAACTAAGGAATCACAAGGGTTTCAAAAGCAGACATCCTTAACCGTTGAAAGAAGTGCAAAACCACCCCCACCCCTCGATGAGCACTCTGAAGCTATTGGTCATGGAATTCACAGATACCAAGATCAACTACGTTGTGATCAAACCTCAGGCTCAGAAGCACTTAGAGCCAAGGAAAACGATTATAATAATAATAACACTTTCTGTCAAGAACCGTTCCTAGCTTCTTCCGTGTGCTCTCTTGGAGCCTCCAACGACCCAAACCATGGTATCAGGAAACATGAGGACACTGACGACTCAATATATTTAAGTGATAATGACGAAGAGCCTGAGAATATGATAAAGCAAGATAGGGAGGGTAACAGAGTCAAGAGAAGCAGGAACGCTGAGGTTCATAACTTATCTGAAAAGAAGCGTAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGAGCTCATACCCAATTGCAATAAGGTGGACAAAGCATCAATGCTTGACGATGCCATCGATTACCTGAAGACTCTAAAGCTTCAGTTACAGATAATGTCAATGGGAAGTGGATTATGGCCACTTATGATGCTACCTGCTGCCGCAGCGCCTCACATGAATGGACCACATTTACCACAGTTAGTGGGAGCTGGAATGGGATTCAGGCCACCGCAGCTTCCTATTCCACCACTTTCTGCTATCACAGACAACAGACTTCATCACATGTTTGGTTTCCCTAACCAAATACCAACCATGCCAATGCCTCATGCACCTTTCTTCCCCATCATTGGAAATTCTCCCACAGAACCACCCTTGGCTGCCACCACCACACCCACCATACCAAACATGGCACAACATCTTGCTAAAACTGCTGCATCTCTTCAAGTCTCACTCCCCACCAACTCGGACCCTCAGGAAAATGCATCAAACAGACTGCAGAATCCAGTGTCCTTTCATCCCCATGGCATTAGTACTCCACTAGCTACCCCTTTCATTTTTCCACAAAGGTAA | 1644 | 0.4422 | MIQEMLHSTGSAMTRTSSHVPSIYDNDLLELVWENGEVVVRGGSSDRSRNTNEERVYEDVSIKRTRLNPLYSLEDHLPPLKESYMSSSYQSNAQDSCHSAQTKNSCKLNEEFENLLRQAKDSKPVTPSYTLLQQCSSSSPLKKQRTDSTQTLPPPNTRNLGFDQTTAKVNFSNFSIPAVFLKSSTCQGNSTTQQAKNHSSPPRTEEIEAPKVEKSTKESQGFQKQTSLTVERSAKPPPPLDEHSEAIGHGIHRYQDQLRCDQTSGSEALRAKENDYNNNNTFCQEPFLASSVCSLGASNDPNHGIRKHEDTDDSIYLSDNDEEPENMIKQDREGNRVKRSRNAEVHNLSEKKRREKINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQIMSMGSGLWPLMMLPAAAAPHMNGPHLPQLVGAGMGFRPPQLPIPPLSAITDNRLHHMFGFPNQIPTMPMPHAPFFPIIGNSPTEPPLAATTTPTIPNMAQHLAKTAASLQVSLPTNSDPQENASNRLQNPVSFHPHGISTPLATPFIFPQR* | 548 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac1g03204 | 547 | PANTHER | TRANSCRIPTION FACTOR PIF3 | 2 | 518 | IPR044273 | GO:0003700|GO:0006355 | |
Phac1g03204 | 547 | MobiDBLite | consensus disorder prediction | 201 | 218 | - | - | |
Phac1g03204 | 547 | Pfam | Helix-loop-helix DNA-binding domain | 345 | 390 | IPR011598 | GO:0046983 | |
Phac1g03204 | 547 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 341 | 390 | IPR011598 | GO:0046983 | |
Phac1g03204 | 547 | MobiDBLite | consensus disorder prediction | 133 | 162 | - | - | |
Phac1g03204 | 547 | SMART | finulus | 347 | 396 | IPR011598 | GO:0046983 | |
Phac1g03204 | 547 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 339 | 405 | IPR036638 | GO:0046983 | |
Phac1g03204 | 547 | FunFam | Basic helix-loop-helix transcription factor | 336 | 399 | - | - | |
Phac1g03204 | 547 | CDD | bHLH_AtPIF_like | 341 | 403 | IPR047265 | - | |
Phac1g03204 | 547 | Gene3D | - | 337 | 398 | IPR036638 | GO:0046983 | |
Phac1g03204 | 547 | MobiDBLite | consensus disorder prediction | 187 | 245 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac1g03204 | Phac-Chr1 | 39474157 | 39477166 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac1g03204 | 4 | 410 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT1G09530 | 29.978 | 3.80e-31 | 125 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Phac1g03204 | HLH | 5.1e-12 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac1g03204 | K12126 | - | gmx:100784724 | 642.884 |