Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03204 ATGATTCAGGAGATGCTTCACTCCACTGGCTCGGCTATGACAAGAACCTCTTCCCATGTACCCTCCATTTATGACAATGATCTCCTTGAGCTGGTGTGGGAAAATGGTGAGGTTGTTGTACGAGGAGGTTCATCAGATAGATCAAGAAACACTAACGAGGAAAGAGTATACGAAGATGTCAGCATAAAAAGAACAAGGTTGAACCCTTTATACTCACTTGAAGATCACCTTCCCCCTCTAAAGGAATCTTACATGAGCTCTTCGTATCAAAGCAATGCCCAAGATTCGTGCCATTCCGCCCAAACCAAGAATTCCTGCAAGCTTAACGAAGAATTTGAAAACTTATTAAGACAAGCAAAAGACTCTAAGCCCGTTACCCCAAGCTATACTCTCTTACAGCAGTGCTCATCTTCATCTCCTCTCAAGAAACAAAGAACAGATTCAACCCAAACACTGCCACCACCAAACACACGGAACTTGGGGTTTGATCAAACAACAGCTAAAGTGAACTTCTCCAATTTTTCAATACCTGCGGTGTTTCTCAAATCTAGTACTTGTCAGGGAAACAGCACAACTCAGCAGGCAAAAAATCATTCATCTCCACCAAGAACGGAGGAGATTGAAGCGCCCAAGGTTGAGAAATCAACTAAGGAATCACAAGGGTTTCAAAAGCAGACATCCTTAACCGTTGAAAGAAGTGCAAAACCACCCCCACCCCTCGATGAGCACTCTGAAGCTATTGGTCATGGAATTCACAGATACCAAGATCAACTACGTTGTGATCAAACCTCAGGCTCAGAAGCACTTAGAGCCAAGGAAAACGATTATAATAATAATAACACTTTCTGTCAAGAACCGTTCCTAGCTTCTTCCGTGTGCTCTCTTGGAGCCTCCAACGACCCAAACCATGGTATCAGGAAACATGAGGACACTGACGACTCAATATATTTAAGTGATAATGACGAAGAGCCTGAGAATATGATAAAGCAAGATAGGGAGGGTAACAGAGTCAAGAGAAGCAGGAACGCTGAGGTTCATAACTTATCTGAAAAGAAGCGTAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGAGCTCATACCCAATTGCAATAAGGTGGACAAAGCATCAATGCTTGACGATGCCATCGATTACCTGAAGACTCTAAAGCTTCAGTTACAGATAATGTCAATGGGAAGTGGATTATGGCCACTTATGATGCTACCTGCTGCCGCAGCGCCTCACATGAATGGACCACATTTACCACAGTTAGTGGGAGCTGGAATGGGATTCAGGCCACCGCAGCTTCCTATTCCACCACTTTCTGCTATCACAGACAACAGACTTCATCACATGTTTGGTTTCCCTAACCAAATACCAACCATGCCAATGCCTCATGCACCTTTCTTCCCCATCATTGGAAATTCTCCCACAGAACCACCCTTGGCTGCCACCACCACACCCACCATACCAAACATGGCACAACATCTTGCTAAAACTGCTGCATCTCTTCAAGTCTCACTCCCCACCAACTCGGACCCTCAGGAAAATGCATCAAACAGACTGCAGAATCCAGTGTCCTTTCATCCCCATGGCATTAGTACTCCACTAGCTACCCCTTTCATTTTTCCACAAAGGTAA 1644 0.4422 MIQEMLHSTGSAMTRTSSHVPSIYDNDLLELVWENGEVVVRGGSSDRSRNTNEERVYEDVSIKRTRLNPLYSLEDHLPPLKESYMSSSYQSNAQDSCHSAQTKNSCKLNEEFENLLRQAKDSKPVTPSYTLLQQCSSSSPLKKQRTDSTQTLPPPNTRNLGFDQTTAKVNFSNFSIPAVFLKSSTCQGNSTTQQAKNHSSPPRTEEIEAPKVEKSTKESQGFQKQTSLTVERSAKPPPPLDEHSEAIGHGIHRYQDQLRCDQTSGSEALRAKENDYNNNNTFCQEPFLASSVCSLGASNDPNHGIRKHEDTDDSIYLSDNDEEPENMIKQDREGNRVKRSRNAEVHNLSEKKRREKINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQIMSMGSGLWPLMMLPAAAAPHMNGPHLPQLVGAGMGFRPPQLPIPPLSAITDNRLHHMFGFPNQIPTMPMPHAPFFPIIGNSPTEPPLAATTTPTIPNMAQHLAKTAASLQVSLPTNSDPQENASNRLQNPVSFHPHGISTPLATPFIFPQR* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03204 547 PANTHER TRANSCRIPTION FACTOR PIF3 2 518 IPR044273 GO:0003700|GO:0006355
Phac1g03204 547 MobiDBLite consensus disorder prediction 201 218 - -
Phac1g03204 547 Pfam Helix-loop-helix DNA-binding domain 345 390 IPR011598 GO:0046983
Phac1g03204 547 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 341 390 IPR011598 GO:0046983
Phac1g03204 547 MobiDBLite consensus disorder prediction 133 162 - -
Phac1g03204 547 SMART finulus 347 396 IPR011598 GO:0046983
Phac1g03204 547 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 339 405 IPR036638 GO:0046983
Phac1g03204 547 FunFam Basic helix-loop-helix transcription factor 336 399 - -
Phac1g03204 547 CDD bHLH_AtPIF_like 341 403 IPR047265 -
Phac1g03204 547 Gene3D - 337 398 IPR036638 GO:0046983
Phac1g03204 547 MobiDBLite consensus disorder prediction 187 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03204 Phac-Chr1 39474157 39477166 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03204 4 410 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 29.978 3.80e-31 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac1g03204 HLH 5.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03204 K12126 - gmx:100784724 642.884