LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac1g03204	ATGATTCAGGAGATGCTTCACTCCACTGGCTCGGCTATGACAAGAACCTCTTCCCATGTACCCTCCATTTATGACAATGATCTCCTTGAGCTGGTGTGGGAAAATGGTGAGGTTGTTGTACGAGGAGGTTCATCAGATAGATCAAGAAACACTAACGAGGAAAGAGTATACGAAGATGTCAGCATAAAAAGAACAAGGTTGAACCCTTTATACTCACTTGAAGATCACCTTCCCCCTCTAAAGGAATCTTACATGAGCTCTTCGTATCAAAGCAATGCCCAAGATTCGTGCCATTCCGCCCAAACCAAGAATTCCTGCAAGCTTAACGAAGAATTTGAAAACTTATTAAGACAAGCAAAAGACTCTAAGCCCGTTACCCCAAGCTATACTCTCTTACAGCAGTGCTCATCTTCATCTCCTCTCAAGAAACAAAGAACAGATTCAACCCAAACACTGCCACCACCAAACACACGGAACTTGGGGTTTGATCAAACAACAGCTAAAGTGAACTTCTCCAATTTTTCAATACCTGCGGTGTTTCTCAAATCTAGTACTTGTCAGGGAAACAGCACAACTCAGCAGGCAAAAAATCATTCATCTCCACCAAGAACGGAGGAGATTGAAGCGCCCAAGGTTGAGAAATCAACTAAGGAATCACAAGGGTTTCAAAAGCAGACATCCTTAACCGTTGAAAGAAGTGCAAAACCACCCCCACCCCTCGATGAGCACTCTGAAGCTATTGGTCATGGAATTCACAGATACCAAGATCAACTACGTTGTGATCAAACCTCAGGCTCAGAAGCACTTAGAGCCAAGGAAAACGATTATAATAATAATAACACTTTCTGTCAAGAACCGTTCCTAGCTTCTTCCGTGTGCTCTCTTGGAGCCTCCAACGACCCAAACCATGGTATCAGGAAACATGAGGACACTGACGACTCAATATATTTAAGTGATAATGACGAAGAGCCTGAGAATATGATAAAGCAAGATAGGGAGGGTAACAGAGTCAAGAGAAGCAGGAACGCTGAGGTTCATAACTTATCTGAAAAGAAGCGTAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGAGCTCATACCCAATTGCAATAAGGTGGACAAAGCATCAATGCTTGACGATGCCATCGATTACCTGAAGACTCTAAAGCTTCAGTTACAGATAATGTCAATGGGAAGTGGATTATGGCCACTTATGATGCTACCTGCTGCCGCAGCGCCTCACATGAATGGACCACATTTACCACAGTTAGTGGGAGCTGGAATGGGATTCAGGCCACCGCAGCTTCCTATTCCACCACTTTCTGCTATCACAGACAACAGACTTCATCACATGTTTGGTTTCCCTAACCAAATACCAACCATGCCAATGCCTCATGCACCTTTCTTCCCCATCATTGGAAATTCTCCCACAGAACCACCCTTGGCTGCCACCACCACACCCACCATACCAAACATGGCACAACATCTTGCTAAAACTGCTGCATCTCTTCAAGTCTCACTCCCCACCAACTCGGACCCTCAGGAAAATGCATCAAACAGACTGCAGAATCCAGTGTCCTTTCATCCCCATGGCATTAGTACTCCACTAGCTACCCCTTTCATTTTTCCACAAAGGTAA	1644	0.4422	MIQEMLHSTGSAMTRTSSHVPSIYDNDLLELVWENGEVVVRGGSSDRSRNTNEERVYEDVSIKRTRLNPLYSLEDHLPPLKESYMSSSYQSNAQDSCHSAQTKNSCKLNEEFENLLRQAKDSKPVTPSYTLLQQCSSSSPLKKQRTDSTQTLPPPNTRNLGFDQTTAKVNFSNFSIPAVFLKSSTCQGNSTTQQAKNHSSPPRTEEIEAPKVEKSTKESQGFQKQTSLTVERSAKPPPPLDEHSEAIGHGIHRYQDQLRCDQTSGSEALRAKENDYNNNNTFCQEPFLASSVCSLGASNDPNHGIRKHEDTDDSIYLSDNDEEPENMIKQDREGNRVKRSRNAEVHNLSEKKRREKINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQIMSMGSGLWPLMMLPAAAAPHMNGPHLPQLVGAGMGFRPPQLPIPPLSAITDNRLHHMFGFPNQIPTMPMPHAPFFPIIGNSPTEPPLAATTTPTIPNMAQHLAKTAASLQVSLPTNSDPQENASNRLQNPVSFHPHGISTPLATPFIFPQR*	548

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Phac1g03204	547	PANTHER	TRANSCRIPTION FACTOR PIF3	2	518	IPR044273	GO:0003700\|GO:0006355
Phac1g03204	547	MobiDBLite	consensus disorder prediction	201	218	-	-
Phac1g03204	547	Pfam	Helix-loop-helix DNA-binding domain	345	390	IPR011598	GO:0046983
Phac1g03204	547	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	341	390	IPR011598	GO:0046983
Phac1g03204	547	MobiDBLite	consensus disorder prediction	133	162	-	-
Phac1g03204	547	SMART	finulus	347	396	IPR011598	GO:0046983
Phac1g03204	547	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	339	405	IPR036638	GO:0046983
Phac1g03204	547	FunFam	Basic helix-loop-helix transcription factor	336	399	-	-
Phac1g03204	547	CDD	bHLH_AtPIF_like	341	403	IPR047265	-
Phac1g03204	547	Gene3D	-	337	398	IPR036638	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac1g03204	Phac-Chr1	39474157	39477166	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac1g03204	4	410	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G09530	29.978	3.80e-31	125

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Phac1g03204		HLH	5.1e-12	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac1g03204	K12126		-	gmx:100784724	642.884

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