Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03203 ATGATTCAGGAGATGCTTCACTCCACTGGCTCGGCTATGACAAGAACCTCTTCCCATGTACCCTCCATTTATGACAATGATCTCCTTGAGCTGGTGTGGGAAAATGGTGAGGTTGTTGTACGAGGAGGTTCATCAGATAGATCAAGAAACACTAACGAGGAAAGAGTATACGAAGATGTCAGCATAAAAAGAACAAGGTTGAACCCTTTATACTCACTTGAAGATCACCTTCCCCCTCTAAAGGAATCTTACATGAGCTCTTCGTATCAAAGCAATGCCCAAGATTCGTGCCATTCCGCCCAAACCAAGAATTCCTGCAAGCTTAACGAAGAATTTGAAAACTTATTAAGACAAGCAAAAGACTCTAAGCCCGTTACCCCAAGCTATACTCTCTTACAGCAGTGCTCATCTTCATCTCCTCTCAAGAAACAAAGAACAGATTCAACCCAAACACTGCCACCACCAAACACACGGAACTTGGGGTTTGATCAAACAACAGCTAAAGTGAACTTCTCCAATTTTTCAATACCTGCGGTGTTTCTCAAATCTAGTACTTGTCAGGGAAACAGCACAACTCAGCAGGCAAAAAATCATTCATCTCCACCAAGAACGGAGGAGATTGAAGCGCCCAAGGTTGAGAAATCAACTAAGGAATCACAAGGGTTTCAAAAGCAGACATCCTTAACCGTTGAAAGAAGTGCAAAACCACCCCCACCCCTCGATGAGCACTCTGAAGCTATTGGTCATGGAATTCACAGATACCAAGATCAACTACGTTGTGATCAAACCTCAGGCTCAGAAGCACTTAGAGCCAAGGAAAACGATTATAATAATAATAACACTTTCTGTCAAGAACCGTTCCTAGCTTCTTCCGTGTGCTCTCTTGGAGCCTCCAACGACCCAAACCATGGTATCAGGAAACATGAGGACACTGACGACTCAATATATTTAAGTGATAATGACGAAGAGCCTGAGAATATGATAAAGCAAGATAGGGAGGGTAACAGAGTCAAGAGAAGCAGGAACGCTGAGGTTCATAACTTATCTGAAAAGTTGTGGACATGTTTGCAGAAGCGTAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGAGCTCATACCCAATTGCAATAAGGTGGACAAAGCATCAATGCTTGACGATGCCATCGATTACCTGAAGACTCTAAAGCTTCAGTTACAGATAATGTCAATGGGAAGTGGATTATGGCCACTTATGATGCTACCTGCTGCCGCAGCGCCTCACATGAATGGACCACATTTACCACAGTTAGTGGGAGCTGGAATGGGATTCAGGCCACCGCAGCTTCCTATTCCACCACTTTCTGCTATCACAGACAACAGACTTCATCACATGTTTGGTTTCCCTAACCAAATACCAACCATGCCAATGCCTCATGCACCTTTCTTCCCCATCATTGGAAATTCTCCCACAGAACCACCCTTGGCTGCCACCACCACACCCACCATACCAAACATGGCACAACATCTTGCTAAAACTGCTGCATCTCTTCAAGTCTCACTCCCCACCAACTCGGACCCTCAGGAAAATGCATCAAACAGACTGCAGAATCCAGTGTCCTTTCATCCCCATGGCATTAGTACTCCACTAGCTACCCCTTTCATTTTTCCACAAAGGTAA 1662 0.4422 MIQEMLHSTGSAMTRTSSHVPSIYDNDLLELVWENGEVVVRGGSSDRSRNTNEERVYEDVSIKRTRLNPLYSLEDHLPPLKESYMSSSYQSNAQDSCHSAQTKNSCKLNEEFENLLRQAKDSKPVTPSYTLLQQCSSSSPLKKQRTDSTQTLPPPNTRNLGFDQTTAKVNFSNFSIPAVFLKSSTCQGNSTTQQAKNHSSPPRTEEIEAPKVEKSTKESQGFQKQTSLTVERSAKPPPPLDEHSEAIGHGIHRYQDQLRCDQTSGSEALRAKENDYNNNNTFCQEPFLASSVCSLGASNDPNHGIRKHEDTDDSIYLSDNDEEPENMIKQDREGNRVKRSRNAEVHNLSEKLWTCLQKRREKINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQIMSMGSGLWPLMMLPAAAAPHMNGPHLPQLVGAGMGFRPPQLPIPPLSAITDNRLHHMFGFPNQIPTMPMPHAPFFPIIGNSPTEPPLAATTTPTIPNMAQHLAKTAASLQVSLPTNSDPQENASNRLQNPVSFHPHGISTPLATPFIFPQR* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03203 553 Pfam Helix-loop-helix DNA-binding domain 357 396 IPR011598 GO:0046983
Phac1g03203 553 MobiDBLite consensus disorder prediction 201 218 - -
Phac1g03203 553 Gene3D - 337 404 IPR036638 GO:0046983
Phac1g03203 553 MobiDBLite consensus disorder prediction 133 162 - -
Phac1g03203 553 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 411 IPR036638 GO:0046983
Phac1g03203 553 CDD bHLH_AtPIF_like 341 409 IPR047265 -
Phac1g03203 553 PANTHER TRANSCRIPTION FACTOR PIF3 2 524 IPR044273 GO:0003700|GO:0006355
Phac1g03203 553 MobiDBLite consensus disorder prediction 187 245 - -
Phac1g03203 553 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 396 IPR011598 GO:0046983
Phac1g03203 553 SMART finulus 347 402 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03203 Phac-Chr1 39474157 39477166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03203 4 416 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 29.581 5.13e-29 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac1g03203 HLH 7.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03203 K12126 - gmx:100784724 636.336