Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03199 ATGGGAAAACACTCTAGCTCTTCTTCCTCCTCAATTAGCAGCAGCAACAACCACCGCCACCTTCTCATTTCAACTGCATCCTCTCTCACACAAGAACTTCCCACTGATCTTAGCCTTGGACTCAGCATTTCCGCCACTCATCATGTTGGCTCTTCTATTTCAAGGGGGCATTGGCAACAACCGCACCACCCTCTTGTGAACATTTCACAAGCTGCTGAAGTGAATGATTGCAACTATCATAGCAGCTTGTTTGTGAAGGTCTACATGGAAGGCATTCCAATAGGAAGGAAGCTCAATATACTTGCTCATGGAGGCTATTATGAGTTAGTGAAGACTCTTGAACACATGTTCGACACTACCATTCTTTGGGGGACAGAGATGAATGGAGTGCAACCTGAGAGATGCCATGTACTAACTTACGAAGATGAAGAAGGGGATTTGGTCATGGTTGGAGATGTTCCTTGGGAGATGTTCTTATCCACAGTAAAGAGATTGAAGATCACAAGGGTAGACACATTCGGGTGTTAA 528 0.4489 MGKHSSSSSSSISSSNNHRHLLISTASSLTQELPTDLSLGLSISATHHVGSSISRGHWQQPHHPLVNISQAAEVNDCNYHSSLFVKVYMEGIPIGRKLNILAHGGYYELVKTLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03199 175 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 74 170 IPR003311 GO:0005634|GO:0006355
Phac1g03199 175 Pfam AUX/IAA family 72 169 IPR033389 -
Phac1g03199 175 ProSiteProfiles PB1 domain profile. 82 172 IPR000270 GO:0005515
Phac1g03199 175 SUPERFAMILY CAD & PB1 domains 76 167 - -
Phac1g03199 175 Gene3D - 77 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03199 Phac-Chr1 39456984 39458287 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03199 86 167 B3 DNA Binding Superfamily AT4G23980 39.024 1.25e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Phac1g03199 AUX_IAA 4.4e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03199 K14484 - gmx:100818376 293.893