Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03138 ATGGATGTTAACATGAAGAAATCACGGTCCACAGAAGAGGTGCAGAATAGTGAAGACACTAGAAAAGGTCCATGGAGCGTTGAAGAGGACACTCTTCTCCAAAATTACGTCGCCACCCACGGCGACGGTCGCTGGAACTCCGTCGCACGCTGTGCAGGCCTTAAGAGATCAGGCAAAAGTTGCAGGCTAAGATGGTTAAACTACTTGCGGCCCGATGTTCGTCGTGGAAATATAACACTCCAGGAACAGATAACCATTCTGGACCTTCACTCTCGGTGGGGCAATAGGTGGTCGAAAATTGCTCGGCATCTTCCCGGTAGAACGGACAACGAAATAAAGAATTATTGGAGGACTCGTGTGATTAAGCAAGCAAGAAATCTGAAGTGTGACGTGGACAGTAAACAGTTCAAAGATGCCTTGCGTTACGTGTGGATGCCCCGTTTGATTGAGCGGATTCAACCGTCATCGGAAACTCACGACCCGCCCCATGTGTCCCCTTCCAAACTTTACCCGAACCCAACTCCTCTGCTCCATCACCAAAACGGGTTACACGGTTCGTGTTCAGGTTCCAGTAATGCCTTGGACTCATCAAGTGCCAAGTTGGAGACTCCTTTAGAGTGTGAAGGTTTGGGCCATAATGTTTCAGTTTCGGGCGTATGTGAGCGAGACTTGGAACAGGGGAATATCACGCTACCTTTAGGTGGTGGGGACTCACTGGAGAGTTTGTGGGATGATCAGAATCTGTGGCTTATGCAACAACTTTGTGATGATCTGGAAATTCAAGACAATTTCCTTGCGTGA 801 0.4856 MDVNMKKSRSTEEVQNSEDTRKGPWSVEEDTLLQNYVATHGDGRWNSVARCAGLKRSGKSCRLRWLNYLRPDVRRGNITLQEQITILDLHSRWGNRWSKIARHLPGRTDNEIKNYWRTRVIKQARNLKCDVDSKQFKDALRYVWMPRLIERIQPSSETHDPPHVSPSKLYPNPTPLLHHQNGLHGSCSGSSNALDSSSAKLETPLECEGLGHNVSVSGVCERDLEQGNITLPLGGGDSLESLWDDQNLWLMQQLCDDLEIQDNFLA* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03138 266 Gene3D - 23 74 - -
Phac1g03138 266 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Phac1g03138 266 CDD SANT 24 69 IPR001005 -
Phac1g03138 266 Gene3D - 79 120 - -
Phac1g03138 266 FunFam Myb transcription factor 22 74 - -
Phac1g03138 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Phac1g03138 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Phac1g03138 266 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Phac1g03138 266 FunFam MYB transcription factor 79 142 - -
Phac1g03138 266 MobiDBLite consensus disorder prediction 1 24 - -
Phac1g03138 266 SMART sant 74 122 IPR001005 -
Phac1g03138 266 SMART sant 21 71 IPR001005 -
Phac1g03138 266 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Phac1g03138 266 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 16 184 IPR044676 GO:0003700|GO:0006355|GO:0043565
Phac1g03138 266 CDD SANT 79 118 IPR001005 -
Phac1g03138 266 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Phac1g03138 266 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03138 Phac-Chr1 39175152 39176652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03138 19 166 MYB Transcription Factor Family AT1G48000 69.799 2.45e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phac1g03138 Myb_DNA-binding 4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03138 K09422 - gmx:100797220 376.711