Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03120 ATGGAGATTCCGAAGGAGCAGATGGAGCAGAGGCTCAATTTCAACGGAGACCCTCCAAACCCTCATTCTCACGACAATGGCAACGGCTTCAACCACTCCCAACCCCTCGATTCTGGATACGCTCTCAACCATCCCGTTCCTCGCCCTCTCCGCAAACGCCCCTGGCACCACTCCAACCAAGGAACTTCTCCAGATCGAGTGGACAGTGCGAGTAATGTAAAACTTTATGTTGCTCCTGTTCCGAGAACTGCCACGGAGGCTGAGATCCGTCCTGTATTTGAAGAACATGGAACTATTGTTGAGGTTGTTCTTTTAAAAGACAAGAGAACAGGTGTACGCCAAGGAAGTTGTTTTGTGAAATACTCAACATTTGATGATGCTGACAGGGCTATCAAGGCTTTAAACAATCAATATACATTTGTTGGGGAATCATATCCCGTTGTTGTCAAATTTGCTGATCGAGAACTTGAACGACTTGGGGTTCGAGGGTTCTCCCGTAACGTGGACAAGAAAGATCCTTTAGAAGTTGTGGCAGATAAAGTTTTTGTTAGTTGCTTCAACAAAGAGGCTACAAAAAAGGATATTGAAGAAATATTTTCCCCTTATGGACATGTAGAAGATATCTTCATTGCGACCAGTCGTGGATATGCTTTTGTCAAATTTTCTAATAGAGAAATGGCATTAGCTGCAATCAAAGGACTGAATAGAACCTTCACGATGAGAGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGATCCTAAGAAACCTAGAACAGGAGAGTCAAGGAGCAACTTTTCATCTGTGAATGCGAATTTTGGACCCTGTTCTCAAGAACCAGCAGTATGGCCACTACCAAATTTTGGTGATTCCAATTACGGAGGAAGTATTTTGCCTATTGCCCCGCATCATTCCTCAATTGCACACCCACAAGTTACTACTCATATGCAAAACTGGGAAGCTGGTGCTGTGGTACAACATTCATTCCCCCCCCAACAATTGCATTCACAGTTGGGTTCAATGCCTTTCGGGTCAATTCAAGCTCCAAAATTGCCTTCTCAGCCATTTATTACTGAGGTGCAGAGACAATCACATCCCGCAGATTCATCAGTTCAAAATATAGAGCAGCACCTTAGTTCACAGCTGGCTAGTCAGACTGGAAGCAACCCTAGTACAGCTGCTGGCAATACCCCACCTGATATGCCTTCAAGTCCCCAAGATGAAGATTTTCCAGAGTATGACTGGAGTGAGCACTACTGCCCCGATGGTGTTAAGTACTACTACAACTGTGTCACTTGTGAAAGCAGATGGGAGAAGCCTGAAGAGTATGTCTTGTACGAGAAAGAATCTCAGAAGCAGCCGGAGCAGGAGGATAATTGCTGCAGTCTCTCACAATTATCGTCATGTTCCTCTCAACAAATTGCTGAAAAACAACAGGAAACAAATCATGACCACAGACAGTCAGATACAAGTCCTGTTGTTGCATAA 1488 0.4429 MEIPKEQMEQRLNFNGDPPNPHSHDNGNGFNHSQPLDSGYALNHPVPRPLRKRPWHHSNQGTSPDRVDSASNVKLYVAPVPRTATEAEIRPVFEEHGTIVEVVLLKDKRTGVRQGSCFVKYSTFDDADRAIKALNNQYTFVGESYPVVVKFADRELERLGVRGFSRNVDKKDPLEVVADKVFVSCFNKEATKKDIEEIFSPYGHVEDIFIATSRGYAFVKFSNREMALAAIKGLNRTFTMRGCDHPLIVRFADPKKPRTGESRSNFSSVNANFGPCSQEPAVWPLPNFGDSNYGGSILPIAPHHSSIAHPQVTTHMQNWEAGAVVQHSFPPQQLHSQLGSMPFGSIQAPKLPSQPFITEVQRQSHPADSSVQNIEQHLSSQLASQTGSNPSTAAGNTPPDMPSSPQDEDFPEYDWSEHYCPDGVKYYYNCVTCESRWEKPEEYVLYEKESQKQPEQEDNCCSLSQLSSCSSQQIAEKQQETNHDHRQSDTSPVVA* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03120 495 Gene3D - 398 461 - -
Phac1g03120 495 SMART ww_5 410 442 IPR001202 GO:0005515
Phac1g03120 495 Pfam WW domain 414 440 IPR001202 GO:0005515
Phac1g03120 495 SMART rrm1_1 180 250 IPR000504 GO:0003723
Phac1g03120 495 SMART rrm1_1 74 150 IPR000504 GO:0003723
Phac1g03120 495 MobiDBLite consensus disorder prediction 358 403 - -
Phac1g03120 495 SUPERFAMILY WW domain 414 446 IPR036020 GO:0005515
Phac1g03120 495 SUPERFAMILY RNA-binding domain, RBD 178 264 IPR035979 GO:0003676
Phac1g03120 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 154 IPR000504 GO:0003723
Phac1g03120 495 Gene3D - 61 159 IPR012677 -
Phac1g03120 495 CDD WW 413 442 IPR001202 GO:0005515
Phac1g03120 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 254 IPR000504 GO:0003723
Phac1g03120 495 SUPERFAMILY RNA-binding domain, RBD 28 152 IPR035979 GO:0003676
Phac1g03120 495 Gene3D - 175 261 IPR012677 -
Phac1g03120 495 MobiDBLite consensus disorder prediction 13 38 - -
Phac1g03120 495 MobiDBLite consensus disorder prediction 472 495 - -
Phac1g03120 495 ProSitePatterns WW/rsp5/WWP domain signature. 415 440 IPR001202 GO:0005515
Phac1g03120 495 MobiDBLite consensus disorder prediction 1 70 - -
Phac1g03120 495 MobiDBLite consensus disorder prediction 358 414 - -
Phac1g03120 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 239 IPR000504 GO:0003723
Phac1g03120 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 138 IPR000504 GO:0003723
Phac1g03120 495 ProSiteProfiles WW/rsp5/WWP domain profile. 415 442 IPR001202 GO:0005515
Phac1g03120 495 PANTHER RNA BINDING PROTEIN 26 424 - -
Phac1g03120 495 FunFam Flowering time control protein FCA isoform B 58 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03120 Phac-Chr1 39108954 39117827 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03120 50 304 Eukaryotic Initiation Factors Gene Family AT1G71770 26.415 7.40e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03120 K13207 - gmx:100776162 805.053