Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03119 ATGGAGATTCCGAAGGAGCAGATGGAGCAGAGGCTCAATTTCAACGGAGACCCTCCAAACCCTCATTCTCACGACAATGGCAACGGCTTCAACCACTCCCAACCCCTCGATTCTGGATACGCTCTCAACCATCCCGTTCCTCGCCCTCTCCGCAAACGCCCCTGGCACCACTCCAACCAAGGAACTTCTCCAGATCGAGTGGACAGTGCGAGTAATGTAAAACTTTATGTTGCTCCTGTTCCGAGAACTGCCACGGAGGCTGAGATCCGTCCTGTATTTGAAGAACATGGAACTATTGTTGAGGTTGTTCTTTTAAAAGACAAGAGAACAGGTGTACGCCAAGGAAGTTGTTTTGTGAAATACTCAACATTTGATGATGCTGACAGGGCTATCAAGGCTTTAAACAATCAATATACATTTGTTGGGGAATCATATCCCGTTGTTGTCAAATTTGCTGATCGAGAACTTGAACGACTTGGGGTTCGAGGGTTCTCCCGTAACGTGGACAAGAAAGATCCTTTAGAAGTTGTGGCAGATAAAGTTTTTGTTAGTTGCTTCAACAAAGAGGCTACAAAAAAGGATATTGAAGAAATATTTTCCCCTTATGGACATGTAGAAGATATCTTCATTGCGACCAGTCGTGGATATGCTTTTGTCAAATTTTCTAATAGAGAAATGGCATTAGCTGCAATCAAAGGACTGAATAGAACCTTCACGATGAGAGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGATCCTAAGAAACCTAGAACAGGAGAGTCAAGGAGCAACTTTTCATCTGTGAATGCGAATTTTGGACCCTGTTCTCAAGAACCAGCAGTATGGCCACTACCAAATTTTGGTGATTCCAATTACGGAGGAAGTATTTTGCCTATTGCCCCGCATCATTCCTCAATTGCACACCCACAAGTTACTACTCATATGCAAAACTGGGAAGCTGGTGCTGTGGTACAACATTCATTCCCCCCCCAACAATTGCATTCACAGTTGGGTTCAATGCCTTTCGGGTCAATTCAAGCTCCAAAATTGCCTTCTCAGCCATTTATTACTGAGGTGCAGAGACAATCACATCCCGCAGATTCATCAGTTCAAAATATAGAGCAGCACCTTAGTTCACAGGTTAGTTACTAG 1155 0.4381 MEIPKEQMEQRLNFNGDPPNPHSHDNGNGFNHSQPLDSGYALNHPVPRPLRKRPWHHSNQGTSPDRVDSASNVKLYVAPVPRTATEAEIRPVFEEHGTIVEVVLLKDKRTGVRQGSCFVKYSTFDDADRAIKALNNQYTFVGESYPVVVKFADRELERLGVRGFSRNVDKKDPLEVVADKVFVSCFNKEATKKDIEEIFSPYGHVEDIFIATSRGYAFVKFSNREMALAAIKGLNRTFTMRGCDHPLIVRFADPKKPRTGESRSNFSSVNANFGPCSQEPAVWPLPNFGDSNYGGSILPIAPHHSSIAHPQVTTHMQNWEAGAVVQHSFPPQQLHSQLGSMPFGSIQAPKLPSQPFITEVQRQSHPADSSVQNIEQHLSSQVSY* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03119 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 239 IPR000504 GO:0003723
Phac1g03119 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 138 IPR000504 GO:0003723
Phac1g03119 384 SMART rrm1_1 180 250 IPR000504 GO:0003723
Phac1g03119 384 SMART rrm1_1 74 150 IPR000504 GO:0003723
Phac1g03119 384 SUPERFAMILY RNA-binding domain, RBD 37 163 IPR035979 GO:0003676
Phac1g03119 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 154 IPR000504 GO:0003723
Phac1g03119 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 254 IPR000504 GO:0003723
Phac1g03119 384 Gene3D - 175 261 IPR012677 -
Phac1g03119 384 PANTHER RNA BINDING PROTEIN 24 317 - -
Phac1g03119 384 MobiDBLite consensus disorder prediction 13 38 - -
Phac1g03119 384 SUPERFAMILY RNA-binding domain, RBD 178 264 IPR035979 GO:0003676
Phac1g03119 384 FunFam Flowering time control protein FCA isoform B 58 159 - -
Phac1g03119 384 Gene3D - 61 159 IPR012677 -
Phac1g03119 384 MobiDBLite consensus disorder prediction 1 70 - -
Phac1g03119 384 MobiDBLite consensus disorder prediction 364 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03119 Phac-Chr1 39108954 39117827 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03119 68 284 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 1.14e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03119 K13207 - gmx:100776162 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g03119 1 39108954 39117827 Phac1g03119 1 39108954 39117827 ECH