Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03118 ATGGAGATTCCGAAGGAGCAGATGGAGCAGAGGCTCAATTTCAACGGAGACCCTCCAAACCCTCATTCTCACGACAATGGCAACGGCTTCAACCACTCCCAACCCCTCGATTCTGGATACGCTCTCAACCATCCCGTTCCTCGCCCTCTCCGCAAACGCCCCTGGCACCACTCCAACCAAGGAACTTCTCCAGATCGAGTGGACAGTGCGAGTAATGTAAAACTTTATGTTGCTCCTGTTCCGAGAACTGCCACGGAGGCTGAGATCCGTCCTGTATTTGAAGAACATGGAACTATTGTTGAGGTTGTTCTTTTAAAAGACAAGAGAACAGGTGTACGCCAAGGAAGTTGTTTTGTGAAATACTCAACATTTGATGATGCTGACAGGGCTATCAAGGCTTTAAACAATCAATATACATTTGTTGGGGAATCATATCCCGTTGTTGTCAAATTTGCTGATCGAGAACTTGAACGACTTGGGGTTCGAGGGTTCTCCCGTAACGTGGACAAGAAAGATCCTTTAGAAGTTGTGGCAGATAAAGTTTTTGTTAGTTGCTTCAACAAAGAGGCTACAAAAAAGGATATTGAAGAAATATTTTCCCCTTATGGACATGTAGAAGATATCTTCATTGCGACCAGTCGTGGATATGCTTTTGTCAAATTTTCTAATAGAGAAATGGCATTAGCTGCAATCAAAGGACTGAATAGAACCTTCACGATGAGAGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGATCCTAAGAAACCTAGAACAGGAGAGTCAAGGAGCAACTTTTCATCTGTGAATGCGAATTTTGGACCCTGTTCTCAAGAACCAGCAGTATGGCCACTACCAAATTTTGGTGATTCCAATTACGGAGGAAGTATTTTGCCTATTGCCCCGCATCATTCCTCAATTGCACACCCACAAGTTACTACTCATATGCAAAACTGGGAAGCTGGTGCTGTGGTACAACATTCATTCCCCCCCCAACAATTGCATTCACAGTTGGGTTCAATGCCTTTCGGGTCAATTCAAGCTCCAAAATTGCCTTCTCAGCCATTTATTACTGAGGTGCAGAGACAATCACATCCCGCAGATTCATCAGTTCAAAATATAGAGCAGCACCTTAGTTCACAGCTGGCTAGTCAGACTGGAAGCAACCCTAGTACAGCTGCTGGCAATACCCCACCTGATATGCCTTCAAGTCCCCAAGATGAAGATTTTCCAGAGTATGACTGGAGTGAGCACTACTGCCCCGATGGTGTTAAGTACTACTACAACTGTGTCACTTGTGAAAGCAGAGTAATGTTTCAACTGTTTGATCTTTGTTCATACAATCTGTTTTGGATTTCTGTTACTTTGGTGTGTGATGGTTACTCTTGA 1389 0.4384 MEIPKEQMEQRLNFNGDPPNPHSHDNGNGFNHSQPLDSGYALNHPVPRPLRKRPWHHSNQGTSPDRVDSASNVKLYVAPVPRTATEAEIRPVFEEHGTIVEVVLLKDKRTGVRQGSCFVKYSTFDDADRAIKALNNQYTFVGESYPVVVKFADRELERLGVRGFSRNVDKKDPLEVVADKVFVSCFNKEATKKDIEEIFSPYGHVEDIFIATSRGYAFVKFSNREMALAAIKGLNRTFTMRGCDHPLIVRFADPKKPRTGESRSNFSSVNANFGPCSQEPAVWPLPNFGDSNYGGSILPIAPHHSSIAHPQVTTHMQNWEAGAVVQHSFPPQQLHSQLGSMPFGSIQAPKLPSQPFITEVQRQSHPADSSVQNIEQHLSSQLASQTGSNPSTAAGNTPPDMPSSPQDEDFPEYDWSEHYCPDGVKYYYNCVTCESRVMFQLFDLCSYNLFWISVTLVCDGYS* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03118 462 Gene3D - 175 261 IPR012677 -
Phac1g03118 462 SMART rrm1_1 180 250 IPR000504 GO:0003723
Phac1g03118 462 SMART rrm1_1 74 150 IPR000504 GO:0003723
Phac1g03118 462 MobiDBLite consensus disorder prediction 358 403 - -
Phac1g03118 462 PANTHER RNA BINDING PROTEIN 24 360 - -
Phac1g03118 462 SUPERFAMILY RNA-binding domain, RBD 178 264 IPR035979 GO:0003676
Phac1g03118 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 154 IPR000504 GO:0003723
Phac1g03118 462 FunFam Flowering time control protein FCA isoform B 58 159 - -
Phac1g03118 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 254 IPR000504 GO:0003723
Phac1g03118 462 MobiDBLite consensus disorder prediction 13 38 - -
Phac1g03118 462 Gene3D - 61 159 IPR012677 -
Phac1g03118 462 MobiDBLite consensus disorder prediction 358 412 - -
Phac1g03118 462 SUPERFAMILY RNA-binding domain, RBD 28 152 IPR035979 GO:0003676
Phac1g03118 462 MobiDBLite consensus disorder prediction 1 70 - -
Phac1g03118 462 SUPERFAMILY WW domain 414 435 IPR036020 GO:0005515
Phac1g03118 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 239 IPR000504 GO:0003723
Phac1g03118 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 138 IPR000504 GO:0003723
Phac1g03118 462 Gene3D - 398 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03118 Phac-Chr1 39108954 39117827 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03118 68 284 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 1.58e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03118 K13207 - gmx:100776162 724.546