Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03112 ATGTCGAAGAGAAAGTTCGGATTTGAAGGCTTCGGCATAAACCGCCAATCCACCTACAGCTTCGAGCGATCCCAGGCCCCTCAGCGACTCTACGTCCCTCCCTCCTCCCGACACGGCCACGACAACTATGAGGACACTGACCTCGACAACATTGACTACGACGACAACAACGACGAAGGGATCAAGAACAGCAACGACGACGACGAAATTGACCCTCTCGACGCCTTCATGGAGGGGATTCACGAGGAGATGCGGGCGGCGCCGCCGCCCATGCCGAAGGAGAAGGCCGAGGACCGGTACCGGGACGACGACGACGATCCCATGGATAGTTTTCTGAAGGCGAAGAAGGATTTAGGGCTGACTCTCGCGTCTGAGGCGCTGCACGCTGGGTACGATTCGGATGAGGAGGTTTATGCTGCTGCCAAAGCCGTGGACGCTGGTATGATTGAGTATGATTCCGATGATAACCCTATTGTTATTGACAAGAAGAAAATTGAGCCCATTCCTGCTCTTGATCACTCTTCCATTGACTACGAACCCTTCAATAAGGATTTTTATGAGGAGACATCTTCAACATCAGGTATGAGTGAGCAGGATGTTAGCGAATACCGGAAGAGTTTGGCTATTCGTGTATCTGGTTTTGATGTTCCTAAGCCAATAAAGACTTTTGAGGACTGTGGGTTTCCGTCACAGATTATGAATGCTATAAAAAAACAAGGGTATGAGAAGCCGACATCTATACAATGTCAGGCTTTGCCAGTTGTGCTTTCGGGCAGGGATATTATTGGTATAGCAAAAACTGGTTCTGGTAAAACGGCTTCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAAGAGGGGCCTATAGGAGTGATATGTGCACCTACCAGAGAATTGGCTCATCAGATATATCTGGAGGCCAAGAAGTTTGCAAAAGCTTATGGGGTACGCGTATCTGCTGTCTATGGTGGCATGTCAAAACTTGAACAGTTCAAAGAACTCAAAGCTGGATGTGAGATAGTTGTTGCTACCCCTGGCAGATTGATAGATATGCTAAAAATGAAGGCATTGACAATGATGAGAGCAACTTACCTGGTGCTGGATGAGGCTGATCGAATGTTTGATCTTGGGTTTGAACCTCAAGTAAGGTCCATCGTTGGGCAGATTAGGCCAGACCGTCAAACATTACTCTTTTCTGCAACAATGCCTCGTAAAGTTGAAAAGTTGGCTAGGGAAATCCTTACTGATCCTACTAGAGTAACTGTTGGAGAGGTGGGGATGGCAAATGAAGATATCACTCAAGTTGTTTGTGTGATTCCTTCTGATACTGAAAAGTTGCCTTGGCTTCTGGAAAAGCTACCTGAAATGATTGATCAAGGTGATACTCTAGTTTTTGCTTCAAAAAAGGCTACCGTGGATGAAATTGAATCACAGTTGGCTCAGAGAGGCTTTAAAGTTGCTGCCCTGCATGGTGATAAAGATCAAGCTTCTCGGATGGATATTTTGCAAAAGTTTAAATCCGGTGTCTACCATGTGCTCGTTGCAACTGATGTTGCAGCCCGGGGTCTTGACATCAAGTCAATTAAGTCAGTGGTAAACTTTGATATTGCAAAGGATATGGATATGCATGTCCATCGCATTGGAAGAACAGGTCGTGCTGGTGACAAGGATGGGGTTGCATACACTCTTATAACTCAGAAAGAAGCACGGTTTGCTGGTGAATTGGTCAATAGCTTAGTTGCTGCTGGTCAGAACGTGTCTGTAGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCGAAACGTGATGCAAGAAAACGAGGTGGGAAAAAAGGCAGAGGTAGAGGTGGTGGTGGAGGTGGTCGTGGTGTGCGTGGAGTGGATTTTGGCTTGGGGATTGGATATAATCCTGAGTCGAACAACGCCCCATCTAACACAGTTCCTACTCGATCTGCCGCTGTAAATTCTCTGCGGACAGGAATGATGTCACAATTTAAGAGTAACTTTGTTGCTGCTTCATCAAACTCTGAGAATCAAGGATTCGGTAACAATACAAGCATGGCTGCTAATAAGAGACCGGCACTCCCTGGTTTTGTATCTGGTGGATCAATTGGTGGTGACGTGAATACATATCAGCACACTGCTTCACTTCCTGCTTCGTCAGCAGTAAATACCAGCACTCAAGGTTCTGGGGTAAATCCTGGTCAGAAGAACATGAATAGTTCTAAACCCAAAGAGAGGCGGAGGCCATCAGGTTGGGATAGATAG 2295 0.4641 MSKRKFGFEGFGINRQSTYSFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIDYDDNNDEGIKNSNDDDEIDPLDAFMEGIHEEMRAAPPPMPKEKAEDRYRDDDDDPMDSFLKAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGMIEYDSDDNPIVIDKKKIEPIPALDHSSIDYEPFNKDFYEETSSTSGMSEQDVSEYRKSLAIRVSGFDVPKPIKTFEDCGFPSQIMNAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGVRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPTRVTVGEVGMANEDITQVVCVIPSDTEKLPWLLEKLPEMIDQGDTLVFASKKATVDEIESQLAQRGFKVAALHGDKDQASRMDILQKFKSGVYHVLVATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSVELMDLAMKDGRFRSKRDARKRGGKKGRGRGGGGGGRGVRGVDFGLGIGYNPESNNAPSNTVPTRSAAVNSLRTGMMSQFKSNFVAASSNSENQGFGNNTSMAANKRPALPGFVSGGSIGGDVNTYQHTASLPASSAVNTSTQGSGVNPGQKNMNSSKPKERRRPSGWDR* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03112 764 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 252 427 IPR014001 -
Phac1g03112 764 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 452 601 IPR001650 -
Phac1g03112 764 Gene3D - 428 605 IPR027417 -
Phac1g03112 764 MobiDBLite consensus disorder prediction 85 104 - -
Phac1g03112 764 MobiDBLite consensus disorder prediction 16 71 - -
Phac1g03112 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 430 IPR027417 -
Phac1g03112 764 MobiDBLite consensus disorder prediction 750 764 - -
Phac1g03112 764 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 373 381 IPR000629 -
Phac1g03112 764 Gene3D - 183 427 IPR027417 -
Phac1g03112 764 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 192 601 - -
Phac1g03112 764 FunFam probable ATP-dependent RNA helicase DDX17 183 430 - -
Phac1g03112 764 Pfam DEAD/DEAH box helicase 245 416 IPR011545 GO:0003676|GO:0005524
Phac1g03112 764 CDD DEADc_DDX42 232 428 - -
Phac1g03112 764 MobiDBLite consensus disorder prediction 16 31 - -
Phac1g03112 764 SMART helicmild6 480 561 IPR001650 -
Phac1g03112 764 MobiDBLite consensus disorder prediction 726 764 - -
Phac1g03112 764 SMART ultradead3 240 442 IPR014001 -
Phac1g03112 764 MobiDBLite consensus disorder prediction 726 749 - -
Phac1g03112 764 CDD SF2_C_DEAD 439 571 - -
Phac1g03112 764 Pfam Helicase conserved C-terminal domain 456 561 IPR001650 -
Phac1g03112 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 596 IPR027417 -
Phac1g03112 764 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 221 249 IPR014014 GO:0003724
Phac1g03112 764 MobiDBLite consensus disorder prediction 607 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03112 Phac-Chr1 39056285 39060752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03112 221 577 Eukaryotic Initiation Factors Gene Family AT3G13920 35.000 3.14e-62 213