Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03085 ATGAATTATATGGCAGATGTTGTTTTGCTAGTCGATGATTTGAAACTGCTTTCTGGGATTCCTCGCTGTAGAATTTGTCATGAAGAAGAGTTTGAAAGCATAGAAACCTTGGAAGCACCTTGTGCTTGCTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATACAAAGATGGTGCAACGAGAAAGGAAATACAACCTGTGAAATATGTCTCCAGCAATATGAACCCGGATATTCAGCTCCACCCAAGAAGTCTAAGATAAATGATGAAGCGATGTCCATTAGGGAGGAAGAAGAAGAGTCAAATGCAAGAATAGAGATAACGGTGGAAGGAATTGCAATGGAAAGCGATTACTCGGAATGCAGTTCAGCAGCTGACAGAAGTGCGTCTTGCTGTCGATCACTTGCAATAGCTTTTACACTTGTCTTACTCGTAAGACATTTTTTCGCAGTGCTTTCAAATGGAACGGAAGATTACCCATTTACACTACCTACTGTAATTATATTAAAGACTAGTGGAATCATTATACCTATGTACATAGTTATTAAGATTATTGGAGCCATTCAGAACAGTAGTCAGCAGTATCAGGATTCTGACGATGACGACACATCAATGTCTGAAGATGAGATACAACATAATGTAAATTTAAGACATTCATAG 660 0.3879 MNYMADVVLLVDDLKLLSGIPRCRICHEEEFESIETLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYSAPPKKSKINDEAMSIREEEEESNARIEITVEGIAMESDYSECSSAADRSASCCRSLAIAFTLVLLVRHFFAVLSNGTEDYPFTLPTVIILKTSGIIIPMYIVIKIIGAIQNSSQQYQDSDDDDTSMSEDEIQHNVNLRHS* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03085 219 SMART ringv_2 22 71 IPR011016 GO:0008270
Phac1g03085 219 Pfam Protein of unknown function (DUF3675) 76 185 IPR022143 -
Phac1g03085 219 MobiDBLite consensus disorder prediction 195 219 - -
Phac1g03085 219 SUPERFAMILY RING/U-box 21 75 - -
Phac1g03085 219 FunFam E3 ubiquitin-protein ligase MARCH4 12 80 - -
Phac1g03085 219 Pfam RING-variant domain 23 70 IPR011016 GO:0008270
Phac1g03085 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 80 IPR013083 -
Phac1g03085 219 ProSiteProfiles Zinc finger RING-type profile. 23 70 IPR001841 -
Phac1g03085 219 ProSiteProfiles Zinc finger RING-CH-type profile. 15 77 IPR011016 GO:0008270
Phac1g03085 219 CDD RING_CH-C4HC3_MARCH 23 70 - -
Phac1g03085 219 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 22 195 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03085 Phac-Chr1 38911437 38913813 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03085 23 111 C3H Transcription Factor Family AT2G37950 33.333 1.87e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03085 - - gmx:100802379 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g03085 1 38911437 38913813 Phac1g03085 1 38911437 38913813 ECH
Phac1g03085 1 38911437 38913813 Phac7g03406 7 35975840 35978745 PCT