Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03084 ATGAATTATATGGCAGATGTTGTTTTGCTAGTCGATGATTTGAAACTGCTTTCTGGGATTCCTCGCTGTAGAATTTGTCATGAAGAAGAGTTTGAAAGCATAGAAACCTTGGAAGCACCTTGTGCTTGCTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATACAAAGATGGTGCAACGAGAAAGGAAATACAACCTGTGAAATATGTCTCCAGCAATATGAACCCGGATATTCAGCTCCACCCAAGAAGTCTAAGATAAATGATGAAGCGATGTCCATTAGGGAGGAAGAAGAAGAGTCAAATGCAAGAATAGAGATAACGGTGGAAGGAATTGCAATGGAAAGCGATTACTCGGAATGCAGTTCAGCAGCTGACAGAAGTGCGTCTTGCTGTCGATCACTTGCAATAGCTTTTACACTTGTCTTACTCGTAAGACATTTTTTCGCAGTGCTTTCAAATGGAACGGAAGATTACCCATTTACACTACCTACTGTAAGTACCTTCCAGTTTTAA 516 0.407 MNYMADVVLLVDDLKLLSGIPRCRICHEEEFESIETLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYSAPPKKSKINDEAMSIREEEEESNARIEITVEGIAMESDYSECSSAADRSASCCRSLAIAFTLVLLVRHFFAVLSNGTEDYPFTLPTVSTFQF* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03084 171 Pfam RING-variant domain 23 70 IPR011016 GO:0008270
Phac1g03084 171 SMART ringv_2 22 71 IPR011016 GO:0008270
Phac1g03084 171 FunFam E3 ubiquitin-protein ligase MARCH4 12 80 - -
Phac1g03084 171 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 22 169 IPR033275 -
Phac1g03084 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 80 IPR013083 -
Phac1g03084 171 SUPERFAMILY RING/U-box 21 75 - -
Phac1g03084 171 ProSiteProfiles Zinc finger RING-type profile. 23 70 IPR001841 -
Phac1g03084 171 ProSiteProfiles Zinc finger RING-CH-type profile. 15 77 IPR011016 GO:0008270
Phac1g03084 171 Pfam Protein of unknown function (DUF3675) 76 170 IPR022143 -
Phac1g03084 171 CDD RING_CH-C4HC3_MARCH 23 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03084 Phac-Chr1 38911437 38913813 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03084 23 111 C3H Transcription Factor Family AT2G37950 33.333 1.47e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03084 - - gmx:100802379 295.049