Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03047 ATGGTTTCGCTCAAACTGCAGAAGCGCCTCGCTGCAAGCGTTCTCAAGTGCGGCAGAGGAAAAGTTTGGCTTGACCCAAATGAAGTCAACGAAATCTCCATGGCCAATTCTCGCCAGAACATAAGGAAGCTGGTTAAGGATGGATTTATTATCAGGAAGCCCACCAAGATTCACTCTCGCTCACGTGCCCGTCGGATGAAGGAGGCCAAGAGAAAAGGACGTCACTCTGGATATGGTAAGCGTAAGGGTACAAGGGAGGCAAGGCTTCCCACTAAAATCCTTTGGATGAGGAGAATGCGTGTGCTCAGACGCTTGCTTCGCAAGTACAGGGAGTCGAAGAAGATTGACAAACACATGTACCATGACATGTACATGAAGGTTAAGGGTAATGTTTTCAAGAACAAGAGGGTTTTGATGGAAAGCATACACAAGTCGAAAGCTGAGAAGGCAAGAGAGAAGACCTTATCCGATCAGTTCGAGGCCAAGCGTGCCAAGAACAAGGCCAGCAGAGAAAGGAAAATTGCCCGGAGGGAGGAACGATTGGCCCAAGGTCCAGGAGAAAAAGTAGCTGCACCCAGTGCTCCTGCTGCTACAGCGTCACAGCCTGCCCAAGCACCAAAGAAAACCAAGAAGTGA 636 0.4937 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKVAAPSAPAATASQPAQAPKKTKK* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03047 211 PANTHER 60S RIBOSOMAL PROTEIN L19 1 188 IPR039547 GO:0003723|GO:0003735|GO:0022625
Phac1g03047 211 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Phac1g03047 211 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Phac1g03047 211 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Phac1g03047 211 Gene3D - 57 191 - -
Phac1g03047 211 MobiDBLite consensus disorder prediction 197 211 - -
Phac1g03047 211 MobiDBLite consensus disorder prediction 57 85 - -
Phac1g03047 211 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Phac1g03047 211 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Phac1g03047 211 FunFam Ribosomal protein L19 1 56 - -
Phac1g03047 211 MobiDBLite consensus disorder prediction 149 211 - -
Phac1g03047 211 MobiDBLite consensus disorder prediction 149 184 - -
Phac1g03047 211 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Phac1g03047 211 FunFam Ribosomal protein L19 57 194 - -
Phac1g03047 211 MobiDBLite consensus disorder prediction 57 79 - -
Phac1g03047 211 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03047 Phac-Chr1 38662051 38664623 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03047 1 211 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.360 1.26e-127 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03047 K02885 - gmx:100527501 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g03047 1 38662051 38664623 Phac1g03047 1 38662051 38664623 ECH