Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03030 ATGATTATTAAGCGGAGCATGAAAACTGCAATTCCAAAGCAGAAATGCTTCAAGTCAGAAAAACTAGGGAATTCGGAGATTCAGCAGAAGTCCAGATTAAATGGGTTTTATTCTGCTGAAGGAGTCTCTGGATCCAGTGAAGCACAGTCCAATTCAAATTCAGTGAATTCCATTGGCACAATTAGAGACTTGCCCCAATCAGAAGAAGGGGAAGGGGTTCGTGCCAGTCAACTCCAGTCTTCCAGGGGTCGTGCCAAGAAGCTTCCTTGCAGGTTCAAGGATTCTGTTCTTTACAACCGTTTAGGGTCTGTATACGAGGATAGGAATACTTTACAAGACGTTGCTATCATGGGTAGTGAGCTAGACTCTCCTTGTTTTCCATGTTCTGCTGAGTTAGGAGATTCCCAGTACTCAGTTAAGACGGTTAAAAAGACAGTTAATGGGGGTCGTTCTTTGTTGGTTAAAGAAAGGAGTAATGGTGTGCCTGGACTAAGTTCCGATGCTGAATGTGTGAATGGAAGTGGGAAAAGGAAGAGAGATGTTTGCAGATTGGAGGATTTTTGCTTGGGTGATATAGTTTGGGCAAAATGCGGGAAGACCCATCCTGCTTGGCCTGCTGTAGTCATTGATCCTTTTCTTCGAGCTCCCAAATCAGTCATAAGTTGTTGTGTCCCTTCTTCACTTTGTGTTATGTTTTTTGGTTACTCCAAAAATGGGAAGAGAAGGGACTATGCCTGGGTGAAGCAGGGGATGATATTCTCCTTCTGGGAATTCATGGACAGATTCCAGGGGCAGATCAAGTTGTACAAAAGTAAAGAAAGTGACTTCCACAAGGCAATGGAGGAGGCAATGTTGGCAGAAGATGGCATTTTGGACTTACACTTGGAAGCTGAGCAAAATATGGTGGGTGCAGATTCCCGGGCTGACCACCGGTTTTCCTATCAAGACCAGGGTACACGGTCTTGTGCTGGCTGTGGTTTGACATTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAGTTGTGCTCCTCAGCACTACTGCAAGTCCTGTGCAAAGTTAATAAAATGGAAACAATATTGTGGCATTTGCAAAATGATTTGGCACCATTCAGATGGGGGAAATTGGGTATGTTGTGATGGTTGTAACGTCTGGGTGCATGCTGAGTGTGACAAAATTTCCAGTAAACTTTTTAAGGATCTGGAAAATATGGATTATTATTGCCCCGATTGCAAGGGAAAATTCAATTGTAAATTATCAACATCACATGGACACAAGTCAAAAAAGATATCAATGGAGAATAGTCAAAAACTTGTATTACGTGAAAATCTTGCGGTGATATGCAATGGCATGGAAGGAATTTATATTCCAAAGCTTCATTTGGTTATGTGCAATTGCGGCTTGTGTGATTCAAAGAAGTATACACTTACTGAATGGGAAAGGCATGCAGGTTGCAAAGCCAAAAAATGGAAACATAGCGTGAAAGTAGAAGGCACAATGCAACCGCTAATAAAATGGATCACTGAACACAATGCCTCAGCTGGAGTTCCCCCGCAGTTAGATCAGCAGCAAATTCTCTCCTTTTTGCAAGAGAAGTACGAGCCAGTTTATGCAAAATGGACAACAGAAAGATGTGCCGTTTGCAGATGGGTGGAAGATTGGGAATATAACAAAATTATCATCTGTAACAGGTGCCAAATGGCTGTCCACCAAGAATGCTATGGGGTAAAGAATGTTCAGGACTTTACTTCCTGGGTTTGTAGAGTTTGTGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTCTGCCCAGTAAAAGGTGGGGCTCTGAAGCCAACTGATGTTGAGATGTTGTGGGTTCATGTCACATGCGCTTGGTTTCAGCCTGAAGTTCTTTTCCAAAATCATGAGGCAATGGAACCGGCCACTGGAATCCTTAAGATTCCTCGTAATTCCTTTTCGAAGACTTGCGTGATCTGTAAACAAAGCCACGGTTCCTGTATAAGTTGTTGCAAATGTGCTACACATTTTCATGTGACATGCGCGTCAAGAATGGGATATATCATGGAATTGCATTCGACAGAAAAGAATGGGACTACAACAACGAAGACGCTGATATACTGTGCAACTCACAGGCTCCCAAACCCAGATTCGGGACTGGTTGTACATACACCCATGGAGGTATTCTCACCGACAATTTCGCTTCGTAATCACCCGAGGTGCTTCAGGGGATCAAGTCTGGCTTCAACAAAGAATATAGAACTTGAACCTTCAAACTCAGAAATTCATGAGATTGATCCACTATCTGCTGCCCGCACTCGGGTGTACGAAAGGTCTTCCAATAAGAAGACTGTTGCGCCTACAATTCACTTGCTTGGGGGGCCAAAGATTCACTCTTTAACTGAAGTAACTCTATTGAATGGCATTAAGGATGCTCAAGCTCGTGAATTTTCTTCTCTTAAGGAGCGTCTTCATCATTTACGGAAGACAGAAAACCAAAGAGTTTGCTTAGGAAAATCAGGAATTCATGGATGGGGCCTCTTTGCTCGTAGAGATTTACAAGAAGGAGAAATGGTTGTTGAATATCGTGGTGAGCAGGTACGACGTAGTATTGCAGACCTAAGGGAAGCAAAGTATCGTTCAGAAGGCAAAGATTGTTATTTGTTCAAGATTAGTGATGAAGTGATGATTGACGCAACGGATAAGGGCAATATTGCACGTATAATAAACCATTCTTGCATGCCAAACTGCTTTGCAAGGATTATGTGCTTGAGTGGTGAGGAGAATCGGATTGTGCTTATTGCGAAGACCATTGTTACAGCTGGTGAAGAACTAACGTAG 2838 0.4285 MIIKRSMKTAIPKQKCFKSEKLGNSEIQQKSRLNGFYSAEGVSGSSEAQSNSNSVNSIGTIRDLPQSEEGEGVRASQLQSSRGRAKKLPCRFKDSVLYNRLGSVYEDRNTLQDVAIMGSELDSPCFPCSAELGDSQYSVKTVKKTVNGGRSLLVKERSNGVPGLSSDAECVNGSGKRKRDVCRLEDFCLGDIVWAKCGKTHPAWPAVVIDPFLRAPKSVISCCVPSSLCVMFFGYSKNGKRRDYAWVKQGMIFSFWEFMDRFQGQIKLYKSKESDFHKAMEEAMLAEDGILDLHLEAEQNMVGADSRADHRFSYQDQGTRSCAGCGLTLPCKTMKKIKDSSCAPQHYCKSCAKLIKWKQYCGICKMIWHHSDGGNWVCCDGCNVWVHAECDKISSKLFKDLENMDYYCPDCKGKFNCKLSTSHGHKSKKISMENSQKLVLRENLAVICNGMEGIYIPKLHLVMCNCGLCDSKKYTLTEWERHAGCKAKKWKHSVKVEGTMQPLIKWITEHNASAGVPPQLDQQQILSFLQEKYEPVYAKWTTERCAVCRWVEDWEYNKIIICNRCQMAVHQECYGVKNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFQPEVLFQNHEAMEPATGILKIPRNSFSKTCVICKQSHGSCISCCKCATHFHVTCASRMGYIMELHSTEKNGTTTTKTLIYCATHRLPNPDSGLVVHTPMEVFSPTISLRNHPRCFRGSSLASTKNIELEPSNSEIHEIDPLSAARTRVYERSSNKKTVAPTIHLLGGPKIHSLTEVTLLNGIKDAQAREFSSLKERLHHLRKTENQRVCLGKSGIHGWGLFARRDLQEGEMVVEYRGEQVRRSIADLREAKYRSEGKDCYLFKISDEVMIDATDKGNIARIINHSCMPNCFARIMCLSGEENRIVLIAKTIVTAGEELT* 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03030 945 ProSiteProfiles Extended PHD (ePHD) domain profile. 596 711 IPR034732 -
Phac1g03030 945 ProSiteProfiles PWWP domain profile. 189 258 IPR000313 -
Phac1g03030 945 Pfam PHD-finger 557 591 - -
Phac1g03030 945 Gene3D SET domain 795 945 IPR046341 -
Phac1g03030 945 MobiDBLite consensus disorder prediction 42 63 - -
Phac1g03030 945 SUPERFAMILY FYVE/PHD zinc finger 357 419 IPR011011 -
Phac1g03030 945 SUPERFAMILY FYVE/PHD zinc finger 543 607 IPR011011 -
Phac1g03030 945 FunFam Histone-lysine N-methyltransferase 594 713 - -
Phac1g03030 945 Pfam SET domain 843 945 IPR001214 GO:0005515
Phac1g03030 945 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 7 945 IPR025780 -
Phac1g03030 945 Pfam PWWP domain 190 286 IPR000313 -
Phac1g03030 945 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 539 593 IPR013083 -
Phac1g03030 945 ProSiteProfiles Zinc finger PHD-type profile. 542 593 IPR019787 -
Phac1g03030 945 PANTHER PHD FINGER PROTEINS 34 392 - -
Phac1g03030 945 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 352 417 IPR013083 -
Phac1g03030 945 SMART set_7 832 945 IPR001214 GO:0005515
Phac1g03030 945 ProSitePatterns Zinc finger PHD-type signature. 545 590 IPR019786 -
Phac1g03030 945 Gene3D - 181 291 - -
Phac1g03030 945 ProSiteProfiles SET domain profile. 832 945 IPR001214 GO:0005515
Phac1g03030 945 CDD PWWP_AtATX3-like 190 289 - -
Phac1g03030 945 Pfam PHD-zinc-finger like domain 598 710 - -
Phac1g03030 945 ProSiteProfiles Zinc finger PHD-type profile. 358 414 IPR019787 -
Phac1g03030 945 CDD PHD_ATX3_4_5_like 544 590 IPR042011 -
Phac1g03030 945 SUPERFAMILY SET domain 830 945 IPR046341 -
Phac1g03030 945 SUPERFAMILY Tudor/PWWP/MBT 186 288 - -
Phac1g03030 945 CDD PHD_TCF19_like 361 411 - -
Phac1g03030 945 MobiDBLite consensus disorder prediction 42 80 - -
Phac1g03030 945 SMART PHD_3 544 591 IPR001965 -
Phac1g03030 945 SMART PHD_3 655 711 IPR001965 -
Phac1g03030 945 SMART PHD_3 360 412 IPR001965 -
Phac1g03030 945 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 594 712 IPR013083 -
Phac1g03030 945 Pfam PHD-finger 360 413 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03030 Phac-Chr1 38517452 38526208 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03030 545 710 C2H2 Transcription Factor Family AT3G14740 34.857 1.04e-21 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac1g03030 zf-HC5HC2H_2 8e-29 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03030 - - gmx:100785063 1417.91