LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac1g03027	ATGTATGATCACATCTCTTTGGATTTCTCTTTCTTGAGATACTCGAAGAAACAGAGTCGTTGCACACATTATATATACGCAGTAGTGGCAGATATCGATTTGATCCAAATAGAACATAAAAATCGCTCCTTACACACGCACTGTTTCAACATCAAAGTCTTCAGTCTTCACTCTTCTTCTCTTTCAACATCAAAGTCTTCACTCTTCTTCTCAATCATGGGTATGGAGCCAGATATTGAATCCAAGTACGCTCATAACGGCAAGGTTATGGTGGGCACTGCCATTCTCCTATTCGTTCTCGTAATCCTCATCATTATGTTCAACACCTATGTCCGCTTCTGCCGCCGTCGCCGCCGTGCTCGCTTGTCTCATTCCCTTCCGATCACTTCCTCCGCCGAGCCCTGTCTCGATCCTTCCGTCATCAAGTCCCTCCCCACTTTCTCCTTCTCCGCCGCCGTCCACCGCTCTCTCCAGGACTGCGCCGTCTGCCTGTCGGAGTTCGCCGACGGCGATAAAGTCCGCGCGCTCCCAAACTGTAACCACGGTTTCCACGCCGACTGCATCGACGCCTGGTTCGCCTCTCACTCCACGTGTCCTCTCTGCCGAACCCCGGTCCAACCAGCCACGGCTTGCTCTGACGCTGAACCCGGTTCGGTTCCGGTTTCCGAAGCGGACGAGGGTTGTTCTTCGTCTTTGGGTCCCCTAATTGCGTGTCCGAGAAAGACTTTGGATATAGTGATAGAGGTGGGTGATGTGGAAAGAGGGTTGGATCCAGTAACCGAAGATGACGGATTCAGATGCTCATTGAAGAGGTTTTGTAATGTTTAA	828	0.5072	MYDHISLDFSFLRYSKKQSRCTHYIYAVVADIDLIQIEHKNRSLHTHCFNIKVFSLHSSSLSTSKSSLFFSIMGMEPDIESKYAHNGKVMVGTAILLFVLVILIIMFNTYVRFCRRRRRARLSHSLPITSSAEPCLDPSVIKSLPTFSFSAAVHRSLQDCAVCLSEFADGDKVRALPNCNHGFHADCIDAWFASHSTCPLCRTPVQPATACSDAEPGSVPVSEADEGCSSSLGPLIACPRKTLDIVIEVGDVERGLDPVTEDDGFRCSLKRFCNV*	276

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac1g03027	275	CDD	RING-H2_EL5-like	159	202	-	-
	Phac1g03027	275	FunFam	E3 ubiquitin-protein ligase ATL6	125	208	-	-
	Phac1g03027	275	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE ATL42	83	217	-	-
	Phac1g03027	275	ProSiteProfiles	Zinc finger RING-type profile.	160	202	IPR001841	-
	Phac1g03027	275	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	136	210	IPR013083	-
	Phac1g03027	275	Pfam	Ring finger domain	159	202	IPR001841	-
	Phac1g03027	275	SMART	ring_2	160	201	IPR001841	-
	Phac1g03027	275	SUPERFAMILY	RING/U-box	140	208	-	-

Showing 1 to 8 of 8 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac1g03027	Phac-Chr1	38509823	38510926	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac1g03027	83	206	Rapid Response to Elicitors	AT3G16720	44.366	1.92e-31	116

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac1g03027	-		-	pvu:PHAVU_001G208400g	493.426

Showing 1 to 1 of 1 entries