Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03027 ATGTATGATCACATCTCTTTGGATTTCTCTTTCTTGAGATACTCGAAGAAACAGAGTCGTTGCACACATTATATATACGCAGTAGTGGCAGATATCGATTTGATCCAAATAGAACATAAAAATCGCTCCTTACACACGCACTGTTTCAACATCAAAGTCTTCAGTCTTCACTCTTCTTCTCTTTCAACATCAAAGTCTTCACTCTTCTTCTCAATCATGGGTATGGAGCCAGATATTGAATCCAAGTACGCTCATAACGGCAAGGTTATGGTGGGCACTGCCATTCTCCTATTCGTTCTCGTAATCCTCATCATTATGTTCAACACCTATGTCCGCTTCTGCCGCCGTCGCCGCCGTGCTCGCTTGTCTCATTCCCTTCCGATCACTTCCTCCGCCGAGCCCTGTCTCGATCCTTCCGTCATCAAGTCCCTCCCCACTTTCTCCTTCTCCGCCGCCGTCCACCGCTCTCTCCAGGACTGCGCCGTCTGCCTGTCGGAGTTCGCCGACGGCGATAAAGTCCGCGCGCTCCCAAACTGTAACCACGGTTTCCACGCCGACTGCATCGACGCCTGGTTCGCCTCTCACTCCACGTGTCCTCTCTGCCGAACCCCGGTCCAACCAGCCACGGCTTGCTCTGACGCTGAACCCGGTTCGGTTCCGGTTTCCGAAGCGGACGAGGGTTGTTCTTCGTCTTTGGGTCCCCTAATTGCGTGTCCGAGAAAGACTTTGGATATAGTGATAGAGGTGGGTGATGTGGAAAGAGGGTTGGATCCAGTAACCGAAGATGACGGATTCAGATGCTCATTGAAGAGGTTTTGTAATGTTTAA 828 0.5072 MYDHISLDFSFLRYSKKQSRCTHYIYAVVADIDLIQIEHKNRSLHTHCFNIKVFSLHSSSLSTSKSSLFFSIMGMEPDIESKYAHNGKVMVGTAILLFVLVILIIMFNTYVRFCRRRRRARLSHSLPITSSAEPCLDPSVIKSLPTFSFSAAVHRSLQDCAVCLSEFADGDKVRALPNCNHGFHADCIDAWFASHSTCPLCRTPVQPATACSDAEPGSVPVSEADEGCSSSLGPLIACPRKTLDIVIEVGDVERGLDPVTEDDGFRCSLKRFCNV* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03027 275 CDD RING-H2_EL5-like 159 202 - -
Phac1g03027 275 FunFam E3 ubiquitin-protein ligase ATL6 125 208 - -
Phac1g03027 275 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 83 217 - -
Phac1g03027 275 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
Phac1g03027 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 210 IPR013083 -
Phac1g03027 275 Pfam Ring finger domain 159 202 IPR001841 -
Phac1g03027 275 SMART ring_2 160 201 IPR001841 -
Phac1g03027 275 SUPERFAMILY RING/U-box 140 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03027 Phac-Chr1 38509823 38510926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03027 83 206 Rapid Response to Elicitors AT3G16720 44.366 1.92e-31 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03027 - - pvu:PHAVU_001G208400g 493.426