Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03009 ATGAGTAGACGCTCGAGCAGAACTGTCTACGTTGGGAATCTACCTGGTGATATCCGTGAAAGGGAAGTTGAAGATTTATTTCTGAAGTATGGACACATAACTCACATAGATCTAAAGGTTCCCCCAAGACCCCCTGGTTACGCCTTCGTAGAGTTTGAAGATGCTCAAGATGCTGAGGATGCAATTCGTGGGCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGCCTGCCCATGGTGGACGTGGTCATTCATCCTCAAGAGATCGACACAGCAGTCACAGCAATGGACGGGCTGGACGTGGGGTATCCAGGCGCTCTGAATATCGTGTTCTTGTTACTGGATTGCCCTCTTCAGCGTCCTGGCAGGATCTTAAGGATCACATGCGCAAGGCAGGAGATGTTTGCTTTTCCCAAGTCTTTCATGATGGAAGGGGTACTACTGGTATTGTGGATTACACAAATTATGATGATATGAAATATGCTATCAAGAAGCTTGATGATTCTGAGTTCCGGAATGCATTTTCCAAGGGTTATGTTCGAGTGAGAGAATATGATTCAAGGCGAGATTCCTCTAGAAGCCCTAGCCGTGGCCCATCTCATTCTAGAGGAAGAAGCTATAGCCGCAGCCGTAGCCGTAGCCGTAGTTACAGTCGGGACAGGAGCCAAAGCAAATCTCCAAAGGGTAAATCTTCACAGCGTTCACCTGCTAAATCTCCATCAAAATCTCCTGCTCCTGTACGTTCTCGTTCAAGATCAAGGTCCCGTTCGTTGTCAGGATCACGGTCCAGGTCCAGATCTCCATTGCCCGCTCGTAATAAAAGTCCCAAAAGGCGCAGTGCTAGCAGGAGTCCGAGTAGGAGCAGAAGCAGGAGCAAGAGTTTGTCTCGGTGA 900 0.4878 MSRRSSRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRHSSHSNGRAGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKGYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSRSYSRDRSQSKSPKGKSSQRSPAKSPSKSPAPVRSRSRSRSRSLSGSRSRSRSPLPARNKSPKRRSASRSPSRSRSRSKSLSR* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03009 299 CDD RRM1_SF2_plant_like 8 78 - -
Phac1g03009 299 CDD RRM2_SF2_plant_like 111 186 - -
Phac1g03009 299 MobiDBLite consensus disorder prediction 186 299 - -
Phac1g03009 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Phac1g03009 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Phac1g03009 299 Gene3D - 2 110 IPR012677 -
Phac1g03009 299 Gene3D - 111 188 IPR012677 -
Phac1g03009 299 SUPERFAMILY RNA-binding domain, RBD 5 175 IPR035979 GO:0003676
Phac1g03009 299 SMART rrm1_1 8 78 IPR000504 GO:0003723
Phac1g03009 299 SMART rrm1_1 112 185 IPR000504 GO:0003723
Phac1g03009 299 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Phac1g03009 299 MobiDBLite consensus disorder prediction 230 272 - -
Phac1g03009 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Phac1g03009 299 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 266 - -
Phac1g03009 299 MobiDBLite consensus disorder prediction 73 108 - -
Phac1g03009 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Phac1g03009 299 MobiDBLite consensus disorder prediction 273 288 - -
Phac1g03009 299 MobiDBLite consensus disorder prediction 73 107 - -
Phac1g03009 299 MobiDBLite consensus disorder prediction 215 229 - -
Phac1g03009 299 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03009 Phac-Chr1 38413543 38418755 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03009 2 195 Eukaryotic Initiation Factors Gene Family AT4G34110 24.631 3.64e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03009 K12890 - gmx:100789847 365.155