Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac1g03009 | ATGAGTAGACGCTCGAGCAGAACTGTCTACGTTGGGAATCTACCTGGTGATATCCGTGAAAGGGAAGTTGAAGATTTATTTCTGAAGTATGGACACATAACTCACATAGATCTAAAGGTTCCCCCAAGACCCCCTGGTTACGCCTTCGTAGAGTTTGAAGATGCTCAAGATGCTGAGGATGCAATTCGTGGGCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGCCTGCCCATGGTGGACGTGGTCATTCATCCTCAAGAGATCGACACAGCAGTCACAGCAATGGACGGGCTGGACGTGGGGTATCCAGGCGCTCTGAATATCGTGTTCTTGTTACTGGATTGCCCTCTTCAGCGTCCTGGCAGGATCTTAAGGATCACATGCGCAAGGCAGGAGATGTTTGCTTTTCCCAAGTCTTTCATGATGGAAGGGGTACTACTGGTATTGTGGATTACACAAATTATGATGATATGAAATATGCTATCAAGAAGCTTGATGATTCTGAGTTCCGGAATGCATTTTCCAAGGGTTATGTTCGAGTGAGAGAATATGATTCAAGGCGAGATTCCTCTAGAAGCCCTAGCCGTGGCCCATCTCATTCTAGAGGAAGAAGCTATAGCCGCAGCCGTAGCCGTAGCCGTAGTTACAGTCGGGACAGGAGCCAAAGCAAATCTCCAAAGGGTAAATCTTCACAGCGTTCACCTGCTAAATCTCCATCAAAATCTCCTGCTCCTGTACGTTCTCGTTCAAGATCAAGGTCCCGTTCGTTGTCAGGATCACGGTCCAGGTCCAGATCTCCATTGCCCGCTCGTAATAAAAGTCCCAAAAGGCGCAGTGCTAGCAGGAGTCCGAGTAGGAGCAGAAGCAGGAGCAAGAGTTTGTCTCGGTGA | 900 | 0.4878 | MSRRSSRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRHSSHSNGRAGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKGYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSRSYSRDRSQSKSPKGKSSQRSPAKSPSKSPAPVRSRSRSRSRSLSGSRSRSRSPLPARNKSPKRRSASRSPSRSRSRSKSLSR* | 300 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac1g03009 | 299 | CDD | RRM1_SF2_plant_like | 8 | 78 | - | - | |
Phac1g03009 | 299 | CDD | RRM2_SF2_plant_like | 111 | 186 | - | - | |
Phac1g03009 | 299 | MobiDBLite | consensus disorder prediction | 186 | 299 | - | - | |
Phac1g03009 | 299 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 76 | IPR000504 | GO:0003723 | |
Phac1g03009 | 299 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 113 | 175 | IPR000504 | GO:0003723 | |
Phac1g03009 | 299 | Gene3D | - | 2 | 110 | IPR012677 | - | |
Phac1g03009 | 299 | Gene3D | - | 111 | 188 | IPR012677 | - | |
Phac1g03009 | 299 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 175 | IPR035979 | GO:0003676 | |
Phac1g03009 | 299 | SMART | rrm1_1 | 8 | 78 | IPR000504 | GO:0003723 | |
Phac1g03009 | 299 | SMART | rrm1_1 | 112 | 185 | IPR000504 | GO:0003723 | |
Phac1g03009 | 299 | FunFam | serine/arginine-rich splicing factor SR34A-like | 111 | 188 | - | - | |
Phac1g03009 | 299 | MobiDBLite | consensus disorder prediction | 230 | 272 | - | - | |
Phac1g03009 | 299 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 82 | IPR000504 | GO:0003723 | |
Phac1g03009 | 299 | PANTHER | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN | 5 | 266 | - | - | |
Phac1g03009 | 299 | MobiDBLite | consensus disorder prediction | 73 | 108 | - | - | |
Phac1g03009 | 299 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 111 | 189 | IPR000504 | GO:0003723 | |
Phac1g03009 | 299 | MobiDBLite | consensus disorder prediction | 273 | 288 | - | - | |
Phac1g03009 | 299 | MobiDBLite | consensus disorder prediction | 73 | 107 | - | - | |
Phac1g03009 | 299 | MobiDBLite | consensus disorder prediction | 215 | 229 | - | - | |
Phac1g03009 | 299 | FunFam | ASF/SF2-like pre-mRNA splicing factor SRP31 | 1 | 110 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac1g03009 | Phac-Chr1 | 38413543 | 38418755 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac1g03009 | 2 | 195 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 24.631 | 3.64e-06 | 46.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac1g03009 | K12890 | - | gmx:100789847 | 365.155 |