Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g03005 ATGTCAGATGTAGTGGGGTGTTTTAATCAGCGTGCGCAGAAATTGTTGGAGCTACATCTTGCTTCTGGCTTCAGAAAGTACTTTTTTTGGATCAAAGGCAGATTGCACGGAAACCATACTGCTCTGATTCAAGAAGGCAAAGATCTTGTCACGTACGCACTCATAAATGCCATGGCTATTCGAAAAATACTCAAGAAATATGATAAGATTCATTATTCCAAGCAAGGGCAATTATTCAAGTCGCAGGTCCAGAGTATGCACAAGGAGATTCTTCAGAGTCCCTGGCTTTGTGAGCTTATGGCCTTCCACATCAATTTAAGGGAAACTAAGGTCAAGTCGAGGAAGGAACATACTTTGTTCGATGGATGTTCTCTCACAATTAAGGATGGGAAACCGTCACTTTCTTGTGAGCTCTTTGATTCTATCAAATTGGATGCTGACTTGACTTGTTCTATATGCTTGGACACACTGTTTGATCCAGTTTCTCTGACTTGTGGCCACATATTCTGCTATATTTGTGCTTGCTCGGCTGCATCAGTATCTATTGTTAACGGACTTAAGTCTGCAGATTCTAAAAAGAAATGTCCTCTATGCCGCGAGGGCGGTGTATATGAAGGTGCCGTGCACTTGGAAGAACTAAATATTCTGTTAGGCCGAAGCTGTCAGGAATACTGGGAGCAGAGGCTTCAGACCGAGAGGGTGGAGAGGATTAAGCAAATAAAGGAACACTGGGATTCACAGTGTAGGGCATTCGTAGGGGTCTAA 765 0.4314 MSDVVGCFNQRAQKLLELHLASGFRKYFFWIKGRLHGNHTALIQEGKDLVTYALINAMAIRKILKKYDKIHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRETKVKSRKEHTLFDGCSLTIKDGKPSLSCELFDSIKLDADLTCSICLDTLFDPVSLTCGHIFCYICACSAASVSIVNGLKSADSKKKCPLCREGGVYEGAVHLEELNILLGRSCQEYWEQRLQTERVERIKQIKEHWDSQCRAFVGV* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g03005 254 SMART ring_2 150 198 IPR001841 -
Phac1g03005 254 SUPERFAMILY RING/U-box 142 201 - -
Phac1g03005 254 ProSiteProfiles Zinc finger RING-type profile. 150 199 IPR001841 -
Phac1g03005 254 Pfam Zinc finger, C3HC4 type (RING finger) 147 200 - -
Phac1g03005 254 ProSiteProfiles SPX domain profile. 1 81 IPR004331 -
Phac1g03005 254 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 253 IPR033326 -
Phac1g03005 254 ProSitePatterns Zinc finger RING-type signature. 165 174 IPR017907 -
Phac1g03005 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 252 IPR013083 -
Phac1g03005 254 CDD RING-HC_BAH1-like 140 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g03005 Phac-Chr1 38392243 38397374 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g03005 146 199 C3H Transcription Factor Family AT4G28270 37.288 1.51e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g03005 K16275 - gmx:100797432 493.041